From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 24 Feb 2006 11:40:07 +0000 (+0000)
Subject: Features now array
X-Git-Tag: Root_VamJalview_2_07b+~102
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=aa7280580db6b414be9dbcf084ade7cda405eb3c;p=jalview.git

Features now array
---

diff --git a/src/jalview/analysis/SeqsetUtils.java b/src/jalview/analysis/SeqsetUtils.java
index 40869c2..61f10b5 100755
--- a/src/jalview/analysis/SeqsetUtils.java
+++ b/src/jalview/analysis/SeqsetUtils.java
@@ -49,7 +49,7 @@ public class SeqsetUtils
     sqinfo.put("Name", seq.getName());
     sqinfo.put("Start", new Integer(seq.getStart()));
     sqinfo.put("End", new Integer(seq.getEnd()));
-    sqinfo.put("SeqFeatures", (seq.getSequenceFeatures() !=null) ? seq.getSequenceFeatures() : new Vector());
+    sqinfo.put("SeqFeatures", (seq.getSequenceFeatures() !=null) ? seq.getSequenceFeatures() : null);
     sqinfo.put("PdbId",
                (seq.getPDBId() != null) ? seq.getPDBId() : new Vector());
     sqinfo.put("datasetSequence", (seq.getDatasetSequence() !=null) ? seq.getDatasetSequence() : new Sequence("THISISAPLACEHOLDER",""));
@@ -71,7 +71,7 @@ public class SeqsetUtils
     String oldname = (String) sqinfo.get("Name");
     Integer start = (Integer) sqinfo.get("Start");
     Integer end = (Integer) sqinfo.get("End");
-    java.util.Vector sfeatures = (java.util.Vector) sqinfo.get(
+    SequenceFeature [] sfeatures = (SequenceFeature[]) sqinfo.get(
         "SeqFeatures");
     Vector pdbid = (Vector) sqinfo.get("PdbId");
     Sequence seqds = (Sequence) sqinfo.get("datasetSequence");
@@ -94,7 +94,7 @@ public class SeqsetUtils
       sq.setEnd(end.intValue());
     }
 
-    if ((sfeatures != null) && (sfeatures.size()>0))
+    if ((sfeatures != null) && (sfeatures.length>0))
     {
       sq.setSequenceFeatures(sfeatures);
     }