From: jprocter <Jim Procter>
Date: Mon, 30 May 2005 15:47:36 +0000 (+0000)
Subject: added default ClustalWS or MuscleWS to remove gaps.
X-Git-Tag: Release_2_0~133
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=abe6225acb5316fd1f8c20e56a58c26aeced0b0c;p=jalview.git

added default ClustalWS or MuscleWS to remove gaps.
---

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 83ee1c3..343ca2b 100755
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -1187,7 +1187,7 @@ public class AlignFrame extends GAlignFrame
 
         }
         if (msa!=null) {
-          jalview.ws.MsaWSClient ct = new jalview.ws.MsaWSClient("ClustalWS", title, msa, true, true);
+          jalview.ws.MsaWSClient ct = new jalview.ws.MsaWSClient("ClustalWS", title, msa, false, true);
         }
   }
 
@@ -1273,7 +1273,7 @@ public class AlignFrame extends GAlignFrame
 
       }
       if (msa!=null) {
-        MsaWSClient ct = new jalview.ws.MsaWSClient("MuscleWS",title, msa, true, true);
+        MsaWSClient ct = new jalview.ws.MsaWSClient("MuscleWS",title, msa, false, true);
       }
   }
     protected void LoadtreeMenuItem_actionPerformed(ActionEvent e) {