From: Jim Procter <j.procter@dundee.ac.uk>
Date: Wed, 25 Aug 2021 17:09:37 +0000 (+0100)
Subject: JAL-3829 3d-beacons has a custom alignment retrieval model but re-uses the parseAlign... 
X-Git-Tag: Release_2_11_2_0~39^2~41
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=ae4fb26bb536d6ee4927919226daf20a8366e77a;p=jalview.git

JAL-3829 3d-beacons has a custom alignment retrieval model but re-uses the parseAlignment method from sequence fetcher
---

diff --git a/src/jalview/gui/SequenceFetcher.java b/src/jalview/gui/SequenceFetcher.java
index dab42b5..7f9d4c7 100755
--- a/src/jalview/gui/SequenceFetcher.java
+++ b/src/jalview/gui/SequenceFetcher.java
@@ -803,8 +803,15 @@ public class SequenceFetcher extends JPanel implements Runnable
   {
     return "Retrieved from " + database.getSelectedItem();
   }
-
-  AlignmentI parseResult(AlignmentI al, String title,
+  /**
+   * constructs an alignment frame given the data and metadata
+   * @param al
+   * @param title
+   * @param currentFileFormat
+   * @param preferredFeatureColours
+   * @return the alignment 
+   */
+  public AlignmentI parseResult(AlignmentI al, String title,
           FileFormatI currentFileFormat,
           FeatureSettingsModelI preferredFeatureColours)
   {