From: jprocter <Jim Procter>
Date: Mon, 30 May 2005 15:46:56 +0000 (+0000)
Subject: propagated use of jalview.util.GapChars for gap removal.
X-Git-Tag: Release_2_0~134
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=af46fdc9918cdfe38c7f74a6000ed1a800bffa1e;p=jalview.git

propagated use of jalview.util.GapChars for gap removal.
---

diff --git a/src/jalview/ws/MsaWSClient.java b/src/jalview/ws/MsaWSClient.java
index 2141f6f..36c3823 100755
--- a/src/jalview/ws/MsaWSClient.java
+++ b/src/jalview/ws/MsaWSClient.java
@@ -109,7 +109,7 @@ public class MsaWSClient
         seqarray[i] = new vamsas.objects.simple.Sequence();
         seqarray[i].setId(newname);
         seqarray[i].setSeq((submitGaps) ? msa[i].getSequence()
-                           : AlignSeq.extractGaps("-. ", msa[i].getSequence()));
+                           : AlignSeq.extractGaps(jalview.util.Comparison.GapChars, msa[i].getSequence()));
       }
 
       this.seqs = new vamsas.objects.simple.SequenceSet();