From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Thu, 13 Jun 2019 11:13:34 +0000 (+0100)
Subject: JAL-3143 recognise lnc_RNA as transcript
X-Git-Tag: Release_2_11_0~10^2~1
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=b020939889b1cfad261693a643ebcd2a10d9a2c7;p=jalview.git

JAL-3143 recognise lnc_RNA as transcript
---

diff --git a/src/jalview/io/gff/SequenceOntologyLite.java b/src/jalview/io/gff/SequenceOntologyLite.java
index 72e906c..7d354e0 100644
--- a/src/jalview/io/gff/SequenceOntologyLite.java
+++ b/src/jalview/io/gff/SequenceOntologyLite.java
@@ -70,6 +70,7 @@ public class SequenceOntologyLite implements SequenceOntologyI
     { "snRNA", "transcript" },
     { "miRNA", "transcript" },
     { "lincRNA", "transcript" },
+    { "lnc_RNA", "transcript" },
     { "rRNA", "transcript" },
     { "mRNA", "transcript" },
     // there are many more sub-types of ncRNA...