From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 27 Oct 2005 11:19:10 +0000 (+0000)
Subject: Allow old style groups file
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=b08ae4419c138647b696f440e09a75a39e63383e;p=jalview.git

Allow old style groups file
---

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index f2d0b69..7b394a3 100755
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -217,11 +217,18 @@ public class AlignFrame
 
           type = st.nextToken();
 
+          if (fr.getColour(type) == null)
+          {
+            // Probably the old style groups file
+            UserColourScheme ucs = new UserColourScheme(type);
+            fr.setColour(type, ucs.findColour("A"));
+          }
+
+
           sf = new SequenceFeature(type, desc, "", start, end);
 
           seq.addSequenceFeature(sf);
 
-          System.out.println(sf.getType()+" "+sf.getBegin());
 
          // sg = new SequenceGroup(text, ucs, true, true, false, start, end);
          // sg.addSequence(seq, false);