From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 7 Apr 2006 08:23:34 +0000 (+0000)
Subject: Must check consensus length if autocalculate off
X-Git-Tag: Release_2_08~45
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=b0c3862ae342f88419e5e685de2b56f060358c05;p=jalview.git

Must check consensus length if autocalculate off
---

diff --git a/src/jalview/schemes/Blosum62ColourScheme.java b/src/jalview/schemes/Blosum62ColourScheme.java
index 6e91e0b..2c0836d 100755
--- a/src/jalview/schemes/Blosum62ColourScheme.java
+++ b/src/jalview/schemes/Blosum62ColourScheme.java
@@ -39,7 +39,7 @@ public class Blosum62ColourScheme
     }
 
 
-    if ( (threshold != 0) && !aboveThreshold(s, j))
+    if ( j>=consensus.length || (threshold != 0 && !aboveThreshold(s, j) ))
     {
       return Color.white;
     }