From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 11 Nov 2005 18:19:30 +0000 (+0000)
Subject: Last chance, is the sequence without id?
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=b1e979c2a213464abb87f4959bfd99fb95c8f236;p=jalview.git

Last chance, is the sequence without id?
---

diff --git a/src/jalview/io/AppletFormatAdapter.java b/src/jalview/io/AppletFormatAdapter.java
index fa2373e..0354f35 100755
--- a/src/jalview/io/AppletFormatAdapter.java
+++ b/src/jalview/io/AppletFormatAdapter.java
@@ -93,9 +93,23 @@
             }
             catch (Exception e)
             {
-                System.err.println("Failed to read alignment using the '" + format +
-                    "' reader.");
-                e.printStackTrace();
+              System.err.println("Failed to read alignment using the '" + format +
+                                 "' reader.\n"+e);
+
+              // Finally test if the user has pasted just the sequence, no id
+              if(type.equalsIgnoreCase("Paste"))
+              {
+                try{
+                  // Possible sequence is just residues with no label
+                  afile = new FastaFile(">UNKNOWN\n" + inFile, "Paste");
+                  return afile.getSeqsAsArray();
+                }catch(Exception ex)
+                {
+                  System.err.println("Failed to read alignment using the 'FASTA' reader.\n"+e);
+                  ex.printStackTrace();
+                }
+
+              }
             }
 
             return null;