From: jprocter <Jim Procter>
Date: Mon, 22 Aug 2005 15:40:28 +0000 (+0000)
Subject: fixed uniquify seq[]
X-Git-Tag: Release_2_04~30
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=b27c65973d5997828f2331df8798b1d212838d8c;hp=cbccf5d4e522cfcbe4f61609cee61f7128f183ec;p=jalview.git

fixed uniquify seq[]
---

diff --git a/src/jalview/analysis/SeqsetUtils.java b/src/jalview/analysis/SeqsetUtils.java
index 78f7278..662322a 100755
--- a/src/jalview/analysis/SeqsetUtils.java
+++ b/src/jalview/analysis/SeqsetUtils.java
@@ -36,6 +36,7 @@ import jalview.datamodel.*;
  */
 public class SeqsetUtils
 {
+
   /**
    * Store essential properties of a sequence in a hashtable for later recovery
    *  Keys are Name, Start, End, SeqFeatures, PdbId
@@ -116,20 +117,18 @@ public class SeqsetUtils
     Hashtable map = new Hashtable();
     String[] un_names = new String[sequences.length];
 
-    if (!write_names)
+    for (int i = 0; i < sequences.length; i++)
     {
-      for (int i = 0; i < sequences.length; i++)
-      {
-        String safename = new String("Sequence" + i);
-        map.put(safename, SeqCharacterHash(sequences[i]));
+      String safename = unique_name(i);
+      map.put(safename, SeqCharacterHash(sequences[i]));
 
-        if (write_names)
-        {
-          sequences[i].setName(safename);
-        }
+      if (write_names)
+      {
+        sequences[i].setName(safename);
       }
     }
 
+
     return map;
   }