From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Mon, 27 Mar 2017 13:25:59 +0000 (+0100)
Subject: JAL-2468 change score model in PCAModel when switching
X-Git-Tag: Release_2_10_2~3^2~105^2~2^2~45
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=b3bc0dc473562a2a8570d79465eb225da8859bf7;p=jalview.git

JAL-2468 change score model in PCAModel when switching
peptide/nucleotide
---

diff --git a/src/jalview/appletgui/PCAPanel.java b/src/jalview/appletgui/PCAPanel.java
index c832305..2d77c59 100644
--- a/src/jalview/appletgui/PCAPanel.java
+++ b/src/jalview/appletgui/PCAPanel.java
@@ -216,6 +216,9 @@ public class PCAPanel extends EmbmenuFrame implements Runnable,
       if (!pcaModel.isNucleotide())
       {
         pcaModel.setNucleotide(true);
+        ScoreModelI scoreModel = ScoreModels.getInstance().getDefaultModel(
+                false);
+        pcaModel.setScoreModel(scoreModel);
         new Thread(this).start();
       }
     }
@@ -224,6 +227,9 @@ public class PCAPanel extends EmbmenuFrame implements Runnable,
       if (pcaModel.isNucleotide())
       {
         pcaModel.setNucleotide(false);
+        ScoreModelI scoreModel = ScoreModels.getInstance().getDefaultModel(
+                true);
+        pcaModel.setScoreModel(scoreModel);
         new Thread(this).start();
       }
     }