From: Jim Procter <jprocter@compbio.dundee.ac.uk>
Date: Wed, 19 Jun 2013 14:33:37 +0000 (+0100)
Subject: Workaround for JWS-61 that resolves JAL-1127
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=b42b79ede67ceb7390d18f8f404c56b2df4ef046;p=jabaws.git

Workaround for JWS-61 that resolves JAL-1127
---

diff --git a/conf/settings/AAConPresets.xml b/conf/settings/AAConPresets.xml
index cdf8d37..2924525 100644
--- a/conf/settings/AAConPresets.xml
+++ b/conf/settings/AAConPresets.xml
@@ -5,21 +5,21 @@
 		<name>Quick conservation</name>
 		<description>Collection of fast conservation methods</description>
 		<optlist>
-			<option>-m=KABAT,JORES,SCHNEIDER,SHENKIN,GERSTEIN,TAYLOR_GAPS,TAYLOR_NO_GAPS,ZVELIBIL,ARMON,THOMPSON,NOT_LANCET,MIRNY,WILLIAMSON</option>
+			<option>-m=KABAT</option><option>-m=JORES</option><option>-m=SCHNEIDER</option><option>-m=SHENKIN</option><option>-m=GERSTEIN</option><option>-m=TAYLOR_GAPS</option><option>-m=TAYLOR_NO_GAPS</option><option>-m=ZVELIBIL</option><option>-m=ARMON</option><option>-m=THOMPSON</option><option>-m=NOT_LANCET</option><option>-m=MIRNY</option><option>-m=WILLIAMSON</option>
 		</optlist>
 	</preset>
 	<preset>
 		<name>Slow conservation</name>
 		<description>Collection of most expensive (slow) conservation methods</description>
 		<optlist>
-			<option>-m=LANDGRAF,KARLIN,SANDER,VALDAR,SMERFS</option>
+			<option>-m=LANDGRAF</option><option>-m=KARLIN</option><option>-m=SANDER</option><option>-m=VALDAR</option><option>-m=SMERFS</option>
 		</optlist>
 	</preset>
 	<preset>
 		<name>Complete conservation</name>
 		<description>Calculate conservation with all supported methods</description>
 		<optlist>
-			<option>-m=KABAT,JORES,SCHNEIDER,SHENKIN,GERSTEIN,TAYLOR_GAPS,TAYLOR_NO_GAPS,ZVELIBIL,ARMON,THOMPSON,NOT_LANCET,MIRNY,WILLIAMSON,LANDGRAF,KARLIN,SANDER,VALDAR,SMERFS</option>
+			<option>-m=KABAT</option><option>-m=JORES</option><option>-m=SCHNEIDER</option><option>-m=SHENKIN</option><option>-m=GERSTEIN</option><option>-m=TAYLOR_GAPS</option><option>-m=TAYLOR_NO_GAPS</option><option>-m=ZVELIBIL</option><option>-m=ARMON</option><option>-m=THOMPSON</option><option>-m=NOT_LANCET</option><option>-m=MIRNY</option><option>-m=WILLIAMSON</option><option>-m=LANDGRAF</option><option>-m=KARLIN</option><option>-m=SANDER</option><option>-m=VALDAR</option><option>-m=SMERFS</option>
 		</optlist>
 	</preset>
 </presets>