From: amwaterhouse
Sequence Feature Inheritance
-Since Jalview 2.07, sequence features are global to a set of +
Since Jalview 2.08, sequence features are global to a set of sequences appearing (independently or together) in many different alignments. Practically, this means features loaded onto one alignment can be viewed in any alignments involving the same sequences. The same @@ -35,14 +35,14 @@ automatically try to fetch sequence features (as described below).
features differently in different alignment views.View→Fetch Sequence Features
When this option is selected, sequence features extracted from the - Uniprot (http://www.ebi.unprot.org/index.html) + Uniprot (http://www.ebi.unprot.org/index.html) record for each sequence are displayed on the alignment.
-Jalview will attempt to retrieve sequence features from Uniprot files using +
Jalview will attempt to retrieve sequence features from Uniprot files using the EBI dbFetch web service using the given sequence names (or - Uniprot ID, if available). A 100% match with + Uniprot ID, if available). A 100% match with the Uniprot record is required for Uniprot features to be view on a sequence.
-More information about the feature is given in a tooltip, which is viewed by - moving the mouse pointer over a sequence feature. The description associated +
More information about the feature is given in a tooltip, which is viewed by + moving the mouse pointer over a sequence feature. The description associated with the feature will then be displayed in a small label near the pointer.
The Sequence Identification Process @@ -63,7 +63,7 @@ automatically try to fetch sequence features (as described below).
-+
In some cases, the ID used to retrieve Uniprot records may be out of date and you will be notified of that a 100% match between the sequence and a Uniprot record was identified, but the sequence name @@ -71,12 +71,12 @@ automatically try to fetch sequence features (as described below).
Sequence→Edit Name), before Jalview will show its sequence features.Precalculated Sequence Features may be added to an alignment from the command - line, drag and drop, or from the "File->Load Features / Annotations" - menu item. See the Features File Format for +
Precalculated Sequence Features may be added to an alignment from the command + line, drag and drop, or from the "File->Load Features / Annotations" + menu item. See the Features File Format for more details.