From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 14 Jun 2006 10:16:23 +0000 (+0000)
Subject: Sequence checks for duplicate features
X-Git-Tag: Release_2_1~353
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=b62bc950d9122b9850a3729ff815c04d4b5c63fd;p=jalview.git

Sequence checks for duplicate features
---

diff --git a/src/jalview/io/DasSequenceFeatureFetcher.java b/src/jalview/io/DasSequenceFeatureFetcher.java
index 8f104c5..2fcb027 100755
--- a/src/jalview/io/DasSequenceFeatureFetcher.java
+++ b/src/jalview/io/DasSequenceFeatureFetcher.java
@@ -37,7 +37,6 @@ import org.biojava.services.das.registry.DasSource;
 import jalview.bin.Cache;
 
 
-
 /**
  * DOCUMENT ME!
  *
@@ -170,30 +169,17 @@ public class DasSequenceFeatureFetcher implements Runnable
                 Cache.log.debug("das source " + ds.getUrl() + " returned " +
                                 features.length + " features");
 
-
                 if (features.length > 0)
                 {
                   for (int i = 0; i < features.length; i++)
                   {
-
                     SequenceFeature f = newSequenceFeature(features[i],
                         source.getNickname());
 
-                    if (seq.sequenceFeatures != null)
-                    {
-                      for (int j = 0; (f != null) && j < seq.sequenceFeatures.length;
-                           j++)
-                      {
-                        if (seq.sequenceFeatures[j].equals(f))
-                        {
-                          f = null;
-                        }
-                      }
-                    }
-                    if (f != null)
-                    {
+                      System.out.println(source.getNickname()+" "+f.getType()+" "+
+                                         f.begin+" "+f.end);
+
                       seq.addSequenceFeature(f);
-                    }
                   }
                 }
               }
@@ -339,7 +325,6 @@ public class DasSequenceFeatureFetcher implements Runnable
     return null;
 
   }
-
 }