From: jprocter <Jim Procter>
Date: Fri, 14 May 2010 11:47:38 +0000 (+0000)
Subject: fix for JAL-533
X-Git-Tag: Release_2_5_1~42
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=b8138e12c481f46e969570fa11ef8409aaa31a15;p=jalview.git

fix for JAL-533
---

diff --git a/src/jalview/schemes/ClustalxColourScheme.java b/src/jalview/schemes/ClustalxColourScheme.java
index c556bb2..c99d3e4 100755
--- a/src/jalview/schemes/ClustalxColourScheme.java
+++ b/src/jalview/schemes/ClustalxColourScheme.java
@@ -212,12 +212,13 @@ public class ClustalxColourScheme extends ResidueColourScheme // implements
     tmp5[3] = conses[19]; // Q
     colours[4] = new ConsensusColour((Color) colhash.get("RED"), tmp5);
 
-    Consensus[] tmp6 = new Consensus[5];
+    Consensus[] tmp6 = new Consensus[6];
     tmp6[0] = conses[3]; // -
     tmp6[1] = conses[29]; // D
     tmp6[2] = conses[10]; // E
-    tmp6[3] = conses[6]; // q
+    tmp6[3] = conses[6]; //  QE
     tmp6[4] = conses[19]; // Q
+    tmp6[5] = conses[2]; // DE
     colours[5] = new ConsensusColour((Color) colhash.get("MAGENTA"), tmp6);
 
     Consensus[] tmp7 = new Consensus[5];