From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 16 Nov 2004 15:16:17 +0000 (+0000)
Subject: Show all hydrophobic residues
X-Git-Tag: Release_2_0~935
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=b83d5f88f9effe4c3506bd348443b717cc189af8;p=jalview.git

Show all hydrophobic residues
---

diff --git a/src/jalview/gui/ColourKey.java b/src/jalview/gui/ColourKey.java
index 4dd62a2..ab399ec 100755
--- a/src/jalview/gui/ColourKey.java
+++ b/src/jalview/gui/ColourKey.java
@@ -116,8 +116,8 @@ protected void taylorMenuItem_actionPerformed(ActionEvent e)
 {
   menu.setText("Taylor colour scheme");
   String [] res = new String[]{"A","V","I","L","M","F","Y","W","H","R","K","N","Q","E","D","S","T","G","P","C"};
-  Color [] col = new Color[20];
-  for (int i=0; i<20; i++)
+  Color [] col = new Color[res.length];
+  for (int i=0; i<res.length; i++)
     col[i] = ResidueProperties.taylor[ ((Integer)ResidueProperties.aaHash.get(res[i])).intValue() ];
 
 
@@ -130,9 +130,9 @@ protected void hydroMenuItem_actionPerformed(ActionEvent e)
 
   menu.setText("Hydrophobicity colour scheme");
   String [] res = new String[]{"I","V","L","F","C","M","A","G","X","T","S","W","Y","P","H","E","Z","Q","D","B","N","K","R"};
-  Color [] col = new Color[20];
+  Color [] col = new Color[res.length];
   HydrophobicColourScheme cs = new HydrophobicColourScheme();
-  for (int i=0; i<20; i++)
+  for (int i=0; i<res.length; i++)
     col[i] = cs.findColour(null,  res[i], -1,  null);
 
   displayKey( res, null, col, "According to the hydrophobicity table of  Kyte, J., and Doolittle, R.F., J. Mol. Biol. 1157, 105-132, 1982.  The most hydrophobic residues according to this table are coloured red and the most hydrophilic ones are coloured blue.");