From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Mon, 1 Feb 2016 12:53:46 +0000 (+0000)
Subject: JAL-1191 more terms added to SequenceOntologyLite
X-Git-Tag: Release_2_10_0~296^2~43
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=b96accb6a3904ea9b424f1dbd8b2b3b4164c521b;p=jalview.git

JAL-1191 more terms added to SequenceOntologyLite
---

diff --git a/src/jalview/io/gff/SequenceOntologyLite.java b/src/jalview/io/gff/SequenceOntologyLite.java
index 173dea6..6719ae6 100644
--- a/src/jalview/io/gff/SequenceOntologyLite.java
+++ b/src/jalview/io/gff/SequenceOntologyLite.java
@@ -58,7 +58,18 @@ public class SequenceOntologyLite implements SequenceOntologyI
      * no sub-types of exon or CDS yet encountered; add if needed
      */
     { "exon", "exon" },
-    { "CDS", "CDS" }
+    { "CDS", "CDS" },
+    
+    /*
+     * used in exonerate GFF
+     */
+    { "protein_match", "protein_match"},
+    { "nucleotide_match", "nucleotide_match"},
+    
+    /*
+     * used in InterProScan GFF
+     */
+    { "polypeptide", "polypeptide" }
   };
   // @formatter:on