From: kjvdheide <kjvanderheide@dundee.ac.uk>
Date: Tue, 9 Jan 2018 10:51:36 +0000 (+0000)
Subject: JAL-2805 added forester --> jalview sequence converter
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=b9f39f8c9eea22d128783fdafe27f048caa3e902;p=jalview.git

JAL-2805 added forester --> jalview sequence converter
---

diff --git a/src/jalview/ext/forester/DataConversions.java b/src/jalview/ext/forester/DataConversions.java
index ceeecde..74a94a6 100644
--- a/src/jalview/ext/forester/DataConversions.java
+++ b/src/jalview/ext/forester/DataConversions.java
@@ -1,5 +1,6 @@
 package jalview.ext.forester;
 
+import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceI;
 import jalview.math.MatrixI;
 
@@ -40,6 +41,16 @@ public final class DataConversions
 
   }
 
+  public static SequenceI createJalviewSequence(
+          org.forester.phylogeny.data.Sequence foresterSeq)
+  {
+    String seq = foresterSeq.getMolecularSequence();
+    SequenceI jalviewSeq = new Sequence(foresterSeq.getName(), seq, 1,
+            seq.length() + 1);
+    return jalviewSeq;
+
+  }
+
 
   // public static org.forester.phylogeny.data.Accession
   // createForesterAccession(