From: cmzmasek@gmail.com Date: Thu, 19 Dec 2013 02:22:06 +0000 (+0000) Subject: in progress X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=ba535d5c454c371097c5d08f4310777cc23bc44a;p=jalview.git in progress --- diff --git a/forester/data/tol_154.xml b/forester/data/tol_154.xml new file mode 100644 index 0000000..2a620bb --- /dev/null +++ b/forester/data/tol_154.xml @@ -0,0 +1,8003 @@ + + + + tol_154.xml + + + 131567 + cellular organisms + + + + Neomura + + + + 2759 + Eukaryota + superkingdom + + + Unikonta + + + 33154 + Opisthokonta + Fungi/Metazoa group + + + + Holozoa + + + Choanoflagellatea & Metazoa + + + 33208 + Metazoa + kingdom + + + + 6072 + Eumetazoa + + + + + Bilateria & Cnidaria + + + 33213 + Bilateria + + + + 33511 + Deuterostomia + + + + + + 7711 + Chordata + phylum + + + Urochordata & Vertebrata + + + 7742 + Vertebrata + + + + 7776 + Gnathostomata + jawed vertebrates + superclass + + + + 117571 + Euteleostomi + bony vertebrates + + + + 8287 + Sarcopterygii + lobe-finned fish + + + + 32523 + Tetrapoda + + + + 32524 + Amniota + + + + 40674 + Mammalia + class + + + Theria + + + 9347 + Eutheria + Placental mammals + + + The new framework for understanding placental mammal evolution + + + + Boreoeutheria + Boreotheria + + + + 314146 + Euarchontoglires + superorder + + + + Euarchonta + + + + 9443 + Primates + order + + + + 376913 + Haplorrhini + suborder + + + + 314293 + Simiiformes + infraorder + + + + 9526 + Catarrhini + + + + 314295 + Hominoidea + Apes + superfamily + + + + 9604 + Hominidae + Great apes + family + + + + 207598 + Homininae + subfamily + + + + Hominini + tribe + + + + 9606 + HUMAN + Homo sapiens + Human + species + http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg + + + + + 9598 + PANTR + Pan troglodytes + Chimpanzee + species + http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg + + + + + + 9595 + GORGO + Gorilla gorilla gorilla + Western lowland gorilla + subspecies + http://upload.wikimedia.org/wikipedia/commons/c/c7/Stavenn_Gorilla_gorilla_00.jpg + + + + + + 9601 + PONAB + Pongo abelii + Sumatran orangutan + Pongo pygmaeus abelii + species + http://www.ism.ac.jp/~hasegawa/photos/animal3b.jpg + + + + + + 61853 + NOMLE + Nomascus leucogenys + Northern white-cheeked gibbon + Hylobates leucogenys + Hylobates concolor leucogenys + species + http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png + http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg + + + + + + 9528 + Cercopithecinae + subfamily + + + + 9544 + MACMU + Macaca mulatta + Rhesus macaque + species + http://www.our-pets.net/images/rhesus1.jpg + + + + + 9557 + PAPHA + Papio hamadryas + Hamadryas baboon + species + http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg + + + + + + + 9483 + CALJA + Callithrix jacchus + White-tufted-ear marmoset + Callithrix jacchus jacchus + 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http://archive.vetknowledge.com/files/images/guinea-pig---tan.jpg + + + + + 10181 + HETGA + Heterocephalus glaber + Naked mole rat + species + http://calphotos.berkeley.edu/imgs/512x768/9092_3191/3555/0080.jpeg + + + + + + + 43179 + SPETR + Spermophilus tridecemlineatus + Thirteen-lined ground squirrel + Ictidomys tridecemlineatus + species + http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg + + + + + + 9975 + Lagomorpha + order + + + + 9978 + OCHPR + Ochotona princeps + Southern American pika + species + http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg + + + + + 9986 + RABIT + Oryctolagus cuniculus + Rabbit + species + http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Rabbit_in_montana.jpg/675px-Rabbit_in_montana.jpg + + + + + + + + 314145 + Laurasiatheria + superorder + + + + Scrotifera + + + Perissodactyla & Cetartiodactyla & Chiroptera + + Perissodactyla & Cetartiodactyla + + + 91561 + 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http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg + + + + + + 9371 + ECHTE + Echinops telfairi + Lesser hedgehog tenrec + species + http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg + + + + + + 9348 + Xenarthra + Edentata + superorder + + + + 9358 + CHOHO + Choloepus hoffmanni + Hoffmann's two-fingered sloth + species + http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg + + + + + 9361 + DASNO + Dasypus novemcinctus + Nine-banded armadillo + species + http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg + + + + + + + + 9263 + Metatheria + Marsupials + + + First combined cladistic analysis of marsupial mammal interrelationships + + + + + + Eometatheria + + + + 9315 + MACEU + Macropus eugenii + Tammar wallaby + species + http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg + + + + + 9305 + SARHA + Sarcophilus harrisii + Tasmanian devil + Sarcophilus laniarius + species + http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg + + + + + + 13616 + MONDO + Monodelphis domestica + Short-tailed gray opossum + species + http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg + + + + + + + 9258 + ORNAN + Ornithorhynchus anatinus + Duckbill platypus + species + http://upload.wikimedia.org/wikipedia/commons/1/12/Platypus_BrokenRiver_QLD_Australia2.png + + + + + + 8457 + Sauropsida + + + + 1329799 + Testudines + Archosauria group + + + The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan + + + + + + + + 8492 + Archosauria + + + + 8825 + Neognathae + superorder + + + Phasianidae & Anatidae (waterfowl) + + + 9005 + Phasianidae + family + + + + 9031 + CHICK + Gallus gallus + Chicken + Gallus domesticus + species + http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg + + + + + 9103 + MELGA + Meleagris gallopavo + Common turkey + species + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg + + + + + + 8839 + ANAPL + Anas platyrhynchos + Domestic duck + Anas boschas + species + http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg + + + + + + 9126 + Passeriformes + order + + + + 59729 + TAEGU + Taeniopygia guttata + Zebra finch + Poephila guttata + species + http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg + + + + + 59894 + FICAL + Ficedula albicollis + Collared flycatcher + Muscicapa albicollis + species + http://www.biolib.cz/IMG/GAL/156619.jpg + + + + + + + 8496 + ALLMI + Alligator mississippiensis + American alligator + species + http://www.herpcenter.com/reptile-caresheets/images/american_alligator.jpg + + + + + + 13735 + PELSI + Pelodiscus sinensis + (Wiegmann, 1835) Cox et al. 1998 + Chinese softshell turtle + Trionyx sinensis + species + http://www.chelonia.org/PsinensisTR1.jpg + + + + + + 1329911 + Toxicofera + + + + 8570 + Serpentes + snakes + infraorder + + + + 8665 + OPHHA + Ophiophagus hannah + King cobra + Naja hannah + species + http://www.thehindu.com/multimedia/dynamic/01674/KING_COBRA_1674012e.jpg + + + + + 176946 + PYTBI + Python bivittatus + Burmese python + Python molurus bivittatus + species + http://www.nps.gov/ever/parknews/images/KLwoodrat_python_5626.jpg + + + + + + 28377 + ANOCA + Anolis carolinensis + Voigt, 1832 + Green anole + American chameleon + species + http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg + http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg + + + + + + + + 8353 + Xenopus + genus + + + + 8355 + XENLA + Xenopus laevis + Daudin, 1802 + African clawed frog + Bufo laevis + species + http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg + + + + + 8364 + XENTR + Xenopus tropicalis + Western clawed frog + Silurana tropicalis + species + http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg + + + + + + + 7897 + LATCH + Latimeria chalumnae + West Indian ocean coelacanth + species + http://marinebio.org/upload/Latimeria-chalumnae/1.jpg + http://images.nationalgeographic.com/wpf/media-live/photos/000/005/cache/coelacanth_501_600x450.jpg + + + + + Teleostei + + 32443 + Teleostei + + + + 123368 + Acanthomorpha + + + + 32485 + Percomorpha + + + + 129949 + Smegmamorpha + + + + 32456 + Atherinomorpha + + + + 8090 + ORYLA + Oryzias latipes + Medaka fish + Japanese ricefish + species + http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg + + + + + 8083 + XIPMA + Xiphophorus maculatus + Guenther, 1866 + Southern platyfish + Platypoecilus maculatus + species + http://upload.wikimedia.org/wikipedia/commons/6/6b/Poissons_06.jpg + + + + + + 69293 + GASAC + Gasterosteus aculeatus + Three-spined stickleback + species + http://www.jjphoto.dk/fish_archive/freshwater/gasterosteus_aculeatus.jpg + + + + + + 31031 + Tetraodontidae + puffers + family + + + + 31033 + TAKRU + Takifugu rubripes + Japanese pufferfish + Fugu rubripes + species + http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg + + + + + 99883 + TETNG + Tetraodon nigroviridis + Green puffer + Chelonodon nigroviridis + species + http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg + + + + + + 8128 + ORENI + Tilapia nilotica + Linnaeus, 1758 + Nile tilapia + Tilapia nilotica + species + http://www.jjphoto.dk/fish_archive/warm_freshwater/oreochromis_niloticus_niloticus.jpg + + + + + + 8049 + GADMO + Gadus morhua + Atlantic cod + species + http://www.marinbi.com/g-morhua.jpg + + + + 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Branchiostoma floridae + Florida lancelet + Amphioxus + species + http://www.nicerweb.com/sketches/video/PBS-ShapeOfLife/4.8_BonesBrawnBrains/Branchiostoma_floridae.jpg + + + + + Hemichordata & Echinodermata + + + + + 7586 + Echinodermata + phylum + + + + 133551 + Eleutherozoa + subphylum + + + + 7674 + Echinacea + superorder + + + + 7654 + LYTVA + Lytechinus variegatus + Green sea urchin + Variegated urchin + species + http://imagess3.enature.com/seashore/seashore_l/sc0090_1l.jpg + + + + + 7668 + STRPU + Strongylocentrotus purpuratus + Purple sea urchin + species + http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg + + + + + + 46514 + PATMI + Patiria miniata + Bat star + Asterina miniata + species + http://calphotos.berkeley.edu/imgs/256x384/9092_3191/3549/0105.jpeg + + + + + + 73431 + Florometra serratissima + common feather star + species + http://www.alaska-in-pictures.com/data/media/1/feather-star-pattern_6081.jpg + + + + + + 10224 + SACKO + Saccoglossus kowalevskii + Agassiz, 1873 + Acorn worm + species + http://faculty.washington.edu/bjswalla/Hemichordata/Enteropneusta/SkowAK.jpg + + + + + + + 33317 + Protostomia + + + + 1206794 + Ecdysozoa + + + The evolution of the Ecdysozoa + + + + 88770 + Panarthropoda + + + Onychophora & Arthropoda + + MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda + + + + 6656 + Arthropoda + phylum + + + A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata + + + + 197563 + Mandibulata + + + Arthropod fossil data increase congruence of morphological and molecular phylogenies + + + + + + 197562 + Pancrustacea + + + + 6960 + Hexapoda + superclass + + + + 50557 + Insecta + true insects + class + + + + 33340 + Neoptera + subclass + + + + 33392 + Endopterygota + infraclass + + + Hymenoptera & Lepidoptera & Diptera + + Lepidoptera & Diptera + + + 7147 + Diptera + order + + + + 7215 + Drosophila + fruit flies + genus + + + The 19 Genomes of Drosophila: A BAC Library Resource for Genus-Wide and Genome-Scale Comparative Evolutionary Research + + + + 32341 + Sophophora + subgenus + + + melanogaster & pseudoobscura subgroups + + + 32346 + melanogaster group + + + + 32351 + melanogaster subgroup + + + DROSE & DROSI & DROME & DROYA + + DROSE & DROSI & DROME + + DROSE & DROSI + + + 7238 + DROSE + Drosophila sechellia + Fruit fly + species + + + + + 7240 + DROSI + Drosophila simulans + Fruit fly + species + + + + + + 7227 + DROME + Drosophila melanogaster + Fruit fly + species + http://www.snv.jussieu.fr/bmedia/ATP/images/dro-mal1.jpg + + + + + + 7245 + DROYA + Drosophila yakuba + Fruit fly + species + + + + + + 7220 + DROER + Drosophila erecta + Fruit fly + species + + + + + + 7217 + DROAN + Drosophila ananassae + Fruit fly + species + 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African malaria mosquito + species + http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg + + + + + 7175 + CULPI + Culex pipiens + House mosquito + species + http://upload.wikimedia.org/wikipedia/commons/3/35/Culex_pipiens_2007-1.jpg + + + + + + + 104431 + Obtectomera + + + + 7091 + BOMMO + Bombyx mori + Silk moth + species + http://lepidoptera.butterflyhouse.com.au/bomb/mori5.jpg + + + + + 13037 + DANPL + Danaus plexippus + Monarch butterfly + species + http://bugguide.net/images/cache/7QFRQQYRJKQ0X0YQM0Z02000U0ORKQR090H07QBRFKNRQQH0P0YRE0YRZQARLQWR70JQG09RYKDQJKCQFKFQJKTQI0.jpg + http://bugguide.net/images/raw/7RTZXR3Z6RRHKZHH8RVL8RRHMZKHERKHQZLHGRLHPR1LERQH4RCZYL1LGRHH7ZZHER1LGRSH7R6L.jpg + + + + + + + 7400 + Apocrita + wasps, ants and bees + + + + 7434 + Aculeata + suborder + + + + 36668 + Formicidae + ants + family + + + + 143999 + Attini + tribe + + + + 12957 + ATTCE + Atta cephalotes + Linnaeus, 1758 + Leafcutter ant + species + http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg + + + + + 103372 + ACREC + Acromyrmex echinatior + Forel, 1899 + Panamanian leafcutter ant + Acromyrmex octospinosus echinatior + species + http://hymenopteragenome.org/acromyrmex/sites/hymenopteragenome.org.acromyrmex/files/Acromyrmex_echinatior2.jpg + + + + + + 104421 + CAMFO + Camponotus floridanus + Buckley, 1866 + Florida carpenter ant + species + http://bugguide.net/images/cache/5RLH6RRHXRALZZ9LZZ6L3LBLXZBL2RFZHZ9L7ZKH4RDZ3L3Z2RZHKZCLMZKH4R0H6R3Z6RSHMZBL5RRH5ROLKZELLZ.jpg + + + + + + 7460 + APIME + Apis mellifera + Honeybee + species + http://www.floridanature.org/photos/Apis_mellifera_6b_&_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg + + + + + + 7425 + NASVI + Nasonia vitripennis + Parasitic wasp + species + http://www.freshpond.org/nasonia.jpg + + + + + + + 7070 + TRICA + Tribolium castaneum + Red flour beetle + species + http://upload.wikimedia.org/wikipedia/commons/d/da/Tribolium_castaneum.jpg + + + + + + 33342 + Paraneoptera + infraclass + + + + 7524 + Hemiptera + order + + + + 7029 + ACYPI + Acyrthosiphon pisum + Pea aphid + species + http://www.agroatlas.ru/content/pests/Acyrthosiphon_pisum/Acyrthosiphon_pisum.jpg + + + + + 13249 + RHOPR + Rhodnius prolixus + Triatomid bug + species + http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg + + + + + + 121224 + PEDHC + Pediculus humanus subsp. corporis + Body louse + subspecies + http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Body_lice.jpg/436px-Body_lice.jpg + + + + + + + 568273 + Machilis germanica + species + http://www.naturefg.com/images/c-animals/machilis.jpg + + + + + + 383857 + Campodea fragilis + species + http://images.wikia.com/insect/images/3/3c/Campodea_fragilis.jpg + + + + + + 6657 + Crustacea + subphylum + + + + 6658 + Branchiopoda + class + + + + 6661 + ARTSF + Artemia franciscana + Brine shrimp + Artemia sanfranciscana + species + http://www.aslo.org/photopost/data/518/medium/8Brine_shrimp.jpg + + + + + 6669 + DAPPU + Daphnia pulex + Water flea + species + http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg + + + + + + 6706 + HOMAM + Homarus americanus + American lobster + http://upload.wikimedia.org/wikipedia/commons/5/5e/Lobster.jpg + + + + + + + 61985 + Myriapoda + subphylum + + + + 7553 + Diplopoda + millipedes + class + + + + 118561 + Helminthomorpha + subclass + + + + 364406 + ANTGC + Antrokoreana gracilipes + Troglobite millipede + species + + + + + 174156 + NARAN + Narceus annularis + Millipede + species + http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg + + + + + + 52428 + Polyxenus lagurus + bristly millipede + species + http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg + + + + + + 7540 + Chilopoda + centipedes + class + + + + 29022 + SCUCO + Scutigera coleoptrata + House centipede + species + http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG + + + + + 126957 + STRMM + Strigamia maritima + European centipede + Geophilus maritimus + species + http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg + + + + + + + + 6843 + Chelicerata + subphylum + + + A 454 sequencing approach for large scale phylogenomic analysis of the common emperor scorpion (Pandinus imperator) + + + + + + + + + Arachnida & Merostomata + + Sea spider + + + + 6854 + Arachnida + class + + + + 6933 + Acari + mites & ticks + subclass + + + + 6945 + IXOSC + Ixodes scapularis + Black-legged tick + Deer tick + species + http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg + + + + + 32264 + TETUR + Tetranychus urticae + Two-spotted spider mite + species + http://upload.wikimedia.org/wikipedia/commons/thumb/c/c5/Tetranychus-urticae.jpg/472px-Tetranychus-urticae.jpg + + + + + + 34649 + MESMA + Mesobuthus martensii + Karsch, 1879 + Manchurian scorpion + Buthus martensi + Buthus martensii + species + http://www.ntnu.no/ub/scorpion-files/m_martensii1.jpg + + + + + + 6850 + LIMPO + Limulus polyphemus + Atlantic horseshoe crab + species + http://www.biopix.eu/photosmedium/Limulus%20polyphemus%2000008.JPG + + + + + + 258330 + Ammothea hilgendorfi + species + http://nathistoc.bio.uci.edu/Pycnogonida/DSCF0073b.jpg + + + + + + + 488523 + Euperipatoides kanangrensis + Reid, 1996 + species + http://content60.eol.org/content/2012/04/05/01/26600_580_360.jpg + http://upload.wikimedia.org/wikipedia/commons/6/67/Euperipatoides_kanangrensis_crop.jpg + + + + + + 232323 + HYPDU + Hypsibius dujardini + Water bear + Macrobiotus dujardini + species + http://content62.eol.org/content/2013/08/23/23/61018_580_360.jpg + + + + + + 6231 + Nematoda + roundworms + phylum + + + + 119089 + Chromadorea + class + + + + + nematode Clade V + + + 6237 + Caenorhabditis + genus + + + Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss + + + CAEBR & CAERE & CAEBE & CAEEL + + CAEBR & CAERE & CAEBE + + CAEBR & CAERE + + + 6238 + CAEBR + Caenorhabditis briggsae + species + http://www.life.umd.edu/biology/haag/briggsae_herm.jpg + + + + + 31234 + CAERE + Caenorhabditis remanei + Caenorhabditis vulgaris + species + http://lemur.amu.edu.pl/share/php/mirnest_1.0/species_images/Caenorhabditis_remanei.jpg + + + + + + 135651 + CAEBE + Caenorhabditis brenneri + Nematode worm + Caenorhabditis CB5161 + species + + + + + + 6239 + CAEEL + Caenorhabditis elegans + species + http://homepages.ed.ac.uk/mbx/C_elegans/N2_picture.gif + + + + + + 281687 + CAEJA + Caenorhabditis japonica + species + + + + + + 54126 + PRIPA + Pristionchus pacificus + Parasitic nematode + species + http://smithlabdb.usc.edu/images/Pristionchus_pacificus.jpg + + + + + + 6296 + Onchocercidae + family + + + + 6279 + BRUMA + Brugia malayi + Filarial nematode worm + species + http://upload.wikimedia.org/wikipedia/commons/4/4a/Brugia_malayi.JPG + + + + + 6293 + WUCBA + Wuchereria bancrofti + species + http://upload.wikimedia.org/wikipedia/commons/a/a9/Wuchereria_bancrofti_1_DPDX.JPG + + + + + + + 6334 + TRISP + Trichinella spiralis + Trichina worm + species + http://upload.wikimedia.org/wikipedia/commons/e/e8/Trichinella_larv1_DPDx.JPG + + + + + + + 1206795 + Lophotrochozoa + + + Annelida & Mollusca + + + 6447 + Mollusca + phylum + + + + 6448 + Gastropoda + class + + + + 6500 + APLCA + Aplysia californica + California sea hare + species + http://upload.wikimedia.org/wikipedia/commons/e/ef/Aplysia_californica.jpg + + + + + 225164 + LOTGI + Lottia gigantea + Owl limpet + species + http://nathistoc.bio.uci.edu/Molluscs/OwlLimpet1.jpg + + + + + + 6545 + Pteriomorphia + Pteriomorpha + subclass + + + + 29159 + CRAGI + Crassostrea gigas + Thunberg, 1793 + Pacific oyster + Crassotrea gigas + Crassostrea angulata + Ostrea gigas + species + http://www.marlin.ac.uk/imgs/o_cragig.jpg + + + + + 50426 + PINFU + Pinctada fucata + Pearl oyster + species + http://www.elrincondelmalacologo.com/Web%20fotos%20marinos%20no%20gasteropodos/Fotos%20coleccion/Pteriidae/Pinctada%20fucata.jpg + + + + + + + 6340 + Annelida + phylum + + + + 283909 + CTEXX + Capitella teleta + Blake, Grassle & Eckelbarger, 2009 + Capitella sp. I + species + http://genome.jgi-psf.org/Capca1/capitella.jpg + + + + + 6412 + HELRO + Helobdella robusta + Californian leech + species + http://genome.jgi-psf.org/Helro1/Helro_leech.jpg + + + + + + + 6157 + Platyhelminthes + phylum + + + + Neodermata + + + + 6179 + Digenea + flukes + subclass + + + + 6183 + SCHMA + Schistosoma mansoni + Blood fluke + species + http://animaldiversity.ummz.umich.edu/site/resources/Grzimek_inverts/Trematoda/Schistosoma_mansoni.jpg/medium.jpg + + + + + 79923 + CLOSI + Clonorchis sinensi + Cobbold, 1875 + Chinese liver fluke + species + http://people.bethel.edu/~kisrob/VirtualBiology/Planaria/Chlonorchis_sinensis.jpg + + + + + + 6211 + ECHMU + Echinococcus multilocularis + species + http://www.stanford.edu/group/parasites/ParaSites2003/Echinococcus/images/Echino_generalinfo.jpg + + + + + + 79327 + SCHMD + Schmidtea mediterranea + Freshwater planarian flatworm + species + http://www.astrobio.net/images/galleryimages_images/Gallery_Image_8136.jpg + + + + + + + + Cnidaria + + 6073 + Cnidaria + phylum + + + + 6102 + Hexacorallia + Ceriantipatharia + Zoantharia + subclass + + + + 70779 + ACRDI + Acropora digitifera + Staghorn coral + species + http://www.botany.hawaii.edu/basch/uhnpscesu/htms/NPSAcorl/images/acropori/acrdigitif7.jpg + + + + + 45351 + NEMVE + Nematostella vectensis + Starlet sea anemone + species + http://genome.jgi-psf.org/Nemve1/Nematostellapolyp.jpg + + + + + + 6085 + HMAXX + Hydra magnipapillata + Ito, 1947 + species + http://www.ncbi.nlm.nih.gov/UniGene/IMG/6085.gif + + + + + + + 10228 + TRIAD + Trichoplax adhaerens + Trichoplax reptans + species + http://genome.jgi-psf.org/Triad1/placozoan_signorovitch.jpg + + + + + + + + 27923 + MNELE + Mnemiopsis leidyi + A. gassiz, 1865 + Sea walnut + Warty comb jellyfish + species + http://images.marinespecies.org/resized/12797_mnemiopsis-leidyi.jpg + http://i.livescience.com/images/i/000/014/544/original/mnemiopsis-leidyi-jellyfish-101014-02.jpg + + + + + 400682 + AMPQE + Amphimedon queenslandica + Hooper & Van Soest, 2006 + Sponge + Reniera sp. JGI-2005 + species + http://images.marinespecies.org/resized/46694_amphimedon-queenslandica.jpg + + + + + + 81524 + Codonosigidae + family + + + + 81824 + MONBE + Monosiga brevicollis + Choanoflagellate + species + http://genome.jgi-psf.org/Monbr1/Monosiga_1.jpg + + + + + 946362 + SALS5 + Salpingoeca rosetta + Proterospongia sp. ATCC 50818 + Salpingoeca sp. ATCC 50818 + Proterospongia sp. (strain ATCC 50818 / BSB-021) + species + http://cfb.unh.edu/phycokey/Choices/Amoebae_Flagellates_Ciliates/Choanoflagellates/SALPINGOECA/salpingoeca_02_300x240_Kalle%20Olli_botany.ut.ee.jpg + + + + + + Ichthyophonida & Filasterea + + + 198625 + Ichthyophonida + order + + + + 4881 + AMOPA + Amoebidium parasiticum + species + http://www.nhm.ku.edu/~fungi/Ilustgenera/amoebi.jpg + + + + + 72019 + SARXX + Sphaeroforma arctica + species + http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg + + + + + + Filasterea + + + + + + + + 595528 + CAPO3 + Capsaspora owczarzaki (strain ATCC 30864) + http://www.berfrois.com/wp-content/uploads/2011/03/Capsaspora_owczarzaki.jpg + + + + + 134558 + Ministeria vibrans + species + http://ars.els-cdn.com/content/image/1-s2.0-S0959437X03001382-gr2.jpg + + + + + + + + Holomycota + Nucletmycea + + + Phylogenomic analyses predict sistergroup relationship of nucleariids and Fungi and paraphyly of zygomycetes with significant support + + + + 4751 + Fungi + kingdom + + + Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi + + + Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota & Chytridiomycota & Neocallimastigomycota + + Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota & Chytridiomycota + + Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota + + Dikarya & Mucoromycotina & Kickxellomycotina + + Dikarya & Mucoromycotina + + + 451864 + Dikarya + subkingdom + + + + + + + + 4890 + Ascomycota + phylum + + + Pezizomycotina & Saccharomycetales + + + 147538 + Pezizomycotina + Euascomycota + subphylum + + + A five-gene phylogeny of Pezizomycotina + + + + + + 716546 + Leotiomyceta + + + Sordariomyceta & Dothideomycetes & Trichocomaceae & Lecanoromycetes + + Sordariomyceta & Dothideomycetes & Lecanoromycetes + + Sordariomyceta & Lecanoromycetes + + + 715989 + Sordariomyceta + + + + 147550 + Sordariomycetes + class + + + Magnaporthales & Hypocreales + + + 5125 + Hypocreales + order + + + + 398408 + AALXX + Acremonium alcalophilum + species + http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg + + + + + 229533 + GIBZE + Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) + Wheat head blight fungus + Fusarium graminearum + Gibberella zeae PH-1 + strain + http://www.apsnet.org/publications/apsnetfeatures/PublishingImages/1999%20Features/Fusarium02sm.jpg + + + + + 413071 + HYPVG + Hypocrea virens (strain Gv29-8 / FGSC 10586) + Gliocladium virens + Trichoderma virens + Gliocladium flavofuscum + Trichoderma virens Gv29-8 + Gliocladium virens + strain + http://www.ars.usda.gov/images/docs/10920_11114/Stroma1.jpg + + + + + + 148305 + MAGGR + Magnaporthe grisea + Rice blast fungus + Pyricularia grisea + species + http://www.forestryimages.org/images/768x512/5369002.jpg + + + + + + 5139 + Sordariales + order + + + + 35718 + Chaetomiaceae + family + + + + 35719 + Thielavia + genus + + + + 573729 + THIHA + Thielavia heterothallica (strain ATCC 42464 / BCRC 31852 / DSM 1799) + (Apinis) Oorschot 1977 + Sporotrichum thermophilum + Myceliophthora thermophila + species + http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg + + + + + 578455 + THITE + Thielavia terrestris (strain ATCC 38088 / NRRL 8126) + Acremonium alabamense + Thielavia terrestris NRRL 8126 + http://genome.jgi-psf.org/public/Thite2/Thite1.jpg + + + + + + 306901 + CHAGB + Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) + Kunze 1817 + Soil fungus + strain + + + + + + 367110 + NEUCR + Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) + strain + + + + + + + 147548 + Leotiomycetes + class + + + + 28983 + Sclerotiniaceae + family + + + + 999810 + BOTF4 + Botryotinia fuckeliana (strain T4) + Noble rot fungus + Botrytis cinerea + strain + + + + + 665079 + SCLS1 + Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) + White mold + Whetzelinia sclerotiorum + strain + + + + + + 78148 + Oidiodendron maius + species + + + + + + + 388435 + Lecanoromycetidae + subclass + + + + 27339 + Cladonia grayi + Cladonia grayi Merr + species + http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg + + + + + 107463 + Xanthoria parietina + species + http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg + + + + + + + 147541 + Dothideomycetes + bitunicate ascomycetes + class + + + A class-wide phylogenetic assessment of Dothideomycetes + + + + 451867 + Dothideomycetidae + subclass + + + A multigene phylogeny of the Dothideomycetes using four nuclear loci + + + + + + + + 134362 + Capnodiales + order + + + + 41254 + Mycosphaerella + genus + + + + 83344 + PFIXX + Pseudocercospora fijiensis + Mycosphaerella fijiensis + species + + + + + 336722 + MYCGM + Mycosphaerella graminicola (strain CBS 115943 / IPO323) + Speckled leaf blotch fungus + Zymoseptoria tritici IPO323 + Mycosphaerella graminicola IPO323 + Septoria tritici + strain + + + + + 64363 + MYCPJ + Mycosphaerella pini + Red band needle blight disease fungus + Dothistroma septosporum + Dothistroma pini + species + + + + + 692275 + MPSXX + Mycosphaerella populorum SO2202 + Septoria musiva SO2202 + http://genome.jgi-psf.org/public/Sepmu1/Septoria-musiva-colony-abundantly-sporulating-2.jpg + + + + + + 430998 + BCOXX + Baudoinia compniacensis + Angels' Share fungus + Torula compniacensis + species + http://www.botanicalgarden.ubc.ca/potd/images/2011/baudoinia-compniacensis2.jpg + + + + + + 5580 + AURPU + Aureobasidium pullulans + Black yeast + Pullularia pullulans + species + + + + 178873 + APPXX + Aureobasidium pullulans var. pullulans + varietas + + + + + 46634 + APMXX + Aureobasidium pullulans var. melanogenum + varietas + http://genome.jgi-psf.org/public/Aurpu_var_mel1/Aurpu_var_mel1_P1010309ApM+(2).JPG + + + + + 1042127 + APSXX + Aureobasidium pullulans var. subglaciale + Aureobasidium pullulans var. nov. PZ-2008 + varietas + + + + + + + 715340 + Pleosporineae + suborder + + + + 28556 + Pleosporaceae + family + + + Cochliobolus & Setosphaeria + + + 45130 + COCSA + Cochliobolus sativus + Bipolaris sorokiniana + species + http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg + + + + + 93612 + SETTU + Setosphaeria turcica + (Luttr.) K.J. Leonard & Suggs, (1974) + Northern corn leaf blight disease fungus + Exserohilum turcicum + Helminthosporium turcicum + species + + + + + + 426418 + PYRTR + Pyrenophora tritici-repentis (strain Pt-1C-BFP) + Wheat tan spot fungus + Drechslera tritici-repentis + strain + + + + + + 321614 + PHANO + Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) + Glume blotch fungus + Septoria nodorum + strain + + + + + + + + 28568 + Trichocomaceae + family + + + + 5052 + Aspergillus + genus + + + + 332952 + ASPFN + Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) + Aspergillus flavus NRRL3357 + strain + http://www.jhunewsletter.com/wp-content/uploads/2012/11/b8fungi.jpeg + + + + + 425011 + ASPNC + Aspergillus niger (strain CBS 513.88 / FGSC A1513) + Aspergillus niger CBS 513.88 + strain + http://www.vetmed.wisc.edu/students/vetmycology/15.jpg + + + + + 344612 + ASPCL + Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) + Aspergillus clavatus NRRL 1 + + + + + Neosartorya & Emericella + + + 227321 + EMENI + Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) + Vuill. 1927 + Aspergillus nidulans + strain + + + + + 331117 + NEOFI + Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) + Aspergillus fischerianus + strain + + + + + + + + 33183 + Onygenales + order + + + The Ajellomycetaceae, a new family of vertebrate-associated Onygenales + + + + + mitosporic Onygenales & Onygenaceae + + + 246410 + COCIM + Coccidioides immitis (strain RS) + Valley fever fungus + Coccidioides immitis RS + + + + + 336963 + UNCRE + Uncinocarpus reesii (strain UAMH 1704) + strain + + + + + + 447093 + AJECG + Ajellomyces capsulata (strain G186AR / H82 / ATCC MYA-2454 / RMSCC 2432) + Darling's disease fungus + Histoplasma capsulatum + + + + + + + 656061 + TUBMM + Tuber melanosporum (strain Mel28) + Perigord black truffle + Tuber melanosporum Mel28 + strain + http://www.trufamania.com/trufas/Tuber%20melanosporum02.jpg + + + + + + 4892 + Saccharomycetales + budding yeasts + order + + + A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis + + + + + mitosporic Saccharomycetales & Debaryomycetaceae & Saccharomycetaceae + + + 4893 + Saccharomycetaceae + family + + + Naumovozyma & Saccharomyces + + + 1064592 + NAUCC + Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630) + Yeast + Saccharomyces castellii + strain + + + + + 559292 + YEAST + Saccharomyces cerevisiae (strain ATCC 204508 / S288c) + Baker's yeast + strain + + + + + Eremothecium & Kluyveromyces + + + 284590 + KLULA + Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) + Yeast + Candida sphaerica + Kluyveromyces lactis NRRL Y-1140 + + + + + 284811 + ASHGO + Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) + Yeast + Eremothecium gossypii + + + + + + Debaryomyces & Candida + + + 5475 + Candida + Torulopsis + genus + + + + 237561 + CANAL + Candida albicans (strain SC5314 / ATCC MYA-2876) + Yeast + strain + + + + + 294747 + CANTT + Candida tropicalis (strain ATCC MYA-3404 / T1) + Yeast + strain + + + + + + 284592 + DEBHA + Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) + Yeast + Torulaspora hansenii + Debaryomyces hansenii CBS767 + + + + + + + 284591 + YARLI + Yarrowia lipolytica (strain CLIB 122 / E 150) + Yeast + Candida lipolytica + strain + + + + + + + 451866 + Taphrinomycotina + subphylum + + + Pneumocystidomycetes & Schizosaccharomycetes + + + 4895 + Schizosaccharomyces + genus + + + + 402676 + SCHJY + Schizosaccharomyces japonicus (strain yFS275 / FY16936) + Fission yeast + strain + + + + + 4899 + SCHOT + Schizosaccharomyces octosporus + Fission yeast + species + http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG + + + + + 284812 + SCHPO + Schizosaccharomyces pombe (strain 972 / ATCC 24843) + Fission yeast + strain + + + + + + 4754 + PNECA + Pneumocystis carinii + species + + + + + + 5606 + Saitoella complicata + species + + + + + + + 5204 + Basidiomycota + phylum + + + Agaricomycotina & Ustilaginomycotina & Pucciniomycotina + + Agaricomycotina & Ustilaginomycotina + + + 5302 + Agaricomycotina + + + + 155619 + Homobasidiomycetes + class + + + Evolution of complex fruiting–body morphologies in homobasidiomycetes + + + Agaricomycetidae & Gloeophyllum & Aphyllophorales + + Agaricomycetidae & Gloeophyllum + + + 452333 + Agaricomycetidae + subclass + + + Agaricales & Boletales + + + 5338 + Agaricales + order + + + Agaricus & Coprinopsis & Laccaria & Pleurotus + + Agaricus & Coprinopsis & Laccaria + + Agaricus & Coprinopsis + + + 597362 + AGABU + Agaricus bisporus var. burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392) + White button mushroom + Agaricus bisporus var. burnettii JB137-S8 + http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg + + + + + 5346 + COPC7 + Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) + Inky cap fungus + Hormographiella aspergillata + strain + http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg + + + + + + 486041 + LACBS + Laccaria bicolor + Bicoloured deceiver + Laccaria laccata var. bicolor + Laccaria bicolor S238N-H82 + strain + http://botit.botany.wisc.edu/toms_fungi/images/L_bicolor_NM.JPG + + + + + + 206324 + Gymnopus luxurians + species + http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg + + + + + + 5322 + PLEOS + Pleurotus ostreatus + Oyster mushroom + White-rot fungus + species + http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg + + + + + + 68889 + Boletales + Melanogastrales + Sclerodermatales + order + + + + 227334 + Coniophorineae + suborder + + + + 80637 + CPUXX + Coniophora puteana + Schum. ex Fries + cellar fungus + species + http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg + + + + + 578457 + SERL9 + Serpula lacrymans var. lacrymans (strain S7.9) + Dry rot fungus + http://www.anbg.gov.au/fungi/images/0160.jpg + + + + + + 388859 + Hydnomerulius pinastri + Spiny dry rot fungus + species + http://genome.jgi.doe.gov/public/Hydpi1/Hydnomerulius_pinastri.jpg + + + + + + + 202697 + JARXX + Jaapia argillacea + species + http://mycor.nancy.inra.fr/blogGenomes/wp-content/uploads/2012/08/IMG_21261.jpg + + + + + + 104355 + GLOTR + Gloeophyllum trabeum + Brown rot fungus + species + http://www.commanster.eu/commanster/Mushrooms/Basidio/SpBasidio/Gloeophyllum.trabeum.jpg + + + + + + 5303 + Aphyllophorales + Gäum. (1926) + Shelf Fungi + Polyporales + order + + + + 83233 + Coriolaceae + family + + + The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes) + + + + + + + Postia & Fomitopsis & Wolfiporia & Trametes + + Antrodia clade + + Antrodia clade + + + + 40483 + FPIXX + Fomitopsis pinicola + (Swartz) P. Karsten + Red banded polypore + Fomes pinicola + Boletus pinicola + species + http://www.mykoweb.com/CAF/photos/Fomitopsis_pinicola(mgw-02).jpg + + + + + 104341 + PPLXX + Postia placenta + Rhodonia placenta + species + http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg + + + + + core polyporoid clade + + core polyporoid clade + + + + 5325 + TRAVE + Trametes versicolor + (L.) Lloyd 1921 + White-rot fungus + Coriolus versicolor + Bjerkandera versicolor + species + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0304/0521.jpeg + + + + + 742152 + WOLCO + Wolfiporia cocos (strain MD-104) + Brown rot fungus + Wolfiporia cocos MD-104 SS10 + http://genome.jgi-psf.org/public/Wolco1/W_cocos_CA-b1.jpg + + + + + + + 42742 + CERSU + Ceriporiopsis subvermispora + species + + + + + + 732165 + DICSQ + Dichomitus squalens (strain LYAD-421) + Western red white-rot fungus + Dichomitus squalens LYAD-421 SS1 + http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg + + + + + + + 13563 + HETAN + Heterobasidion annosum + Root rot fungus + species + + + + + + 5215 + Tremellaceae + family + + + + 5207 + CRYNE + Cryptococcus neoformans + Filobasidiella neoformans + species + + + + + 1029985 + TREME + Tremella mesenterica + Pers. 1800 + Jelly fungus + Yellow Brain + Tremella lutescens + species + + + + + + + 452284 + Ustilaginomycotina + subphylum + + + + 425265 + MALGO + Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) + Dandruff-associated fungus + + + + + 237631 + USTMA + Ustilago maydis (strain 521 / FGSC 9021) + Corn smut fungus + species + + + + + + + 29000 + Pucciniomycotina + subphylum + + + + 5258 + Pucciniales + rusts + order + + + + 747676 + MELLP + Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7) + Kleb. 1902 + Poplar leaf rust fungus + Melampsora larici-populina 98AG31 + Melampsora laricis-populina 98AG31 + strain + + + + + 5297 + PUCGR + Puccinia graminis + Pers. 1794 + Black stem rust fungus + species + + + + + + 89013 + mitosporic Sporidiobolales + + + + 29898 + RHOGR + Rhodotorula graminis + Yeast + species + + + + + 40563 + SPORO + Sporobolomyces roseus + Kluyver & C. B. Niel 1924 + species + + + + + + + + 671144 + WALSC + Wallemia sebi (strain ATCC MYA-4683 / CBS 633.66) + strain + + + + + + + 451507 + Mucoromycotina + subphylum + + + + 34489 + Mucoraceae + family + + + + 36080 + MUCCI + Mucor circinelloides + Mucor griseo-roseus + species + + + + + 4837 + PHYBL + Phycomyces blakesleeanus + species + + + + + 64495 + RHIOR + Rhizopus oryzae + Mucormycosis agent + Rhizopus delemar + Rhizopus arrhizus var. delemar + species + + + + + + 1069443 + MVNXX + Mortierella verticillata NRRL 6337 + species + http://www.ual.es/GruposInv/myco-ual/galeria17/mortierella.jpg + http://www.diark.org/img/species_pict/Mortierella_verticillata + + + + + + + 61392 + CREXX + Coemansia reversa + species + http://genome.jgi.doe.gov/public/Coere1/Coemansia.jpg + + + + + + 28583 + ALLMA + Allomyces macrogynus + species + + + + + + 4761 + Chytridiomycota + chytrids + Mastigomycotina + phylum + + + + 451435 + Chytridiomycetes + class + + + + 684364 + BATDJ + Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) + Frog chytrid fungus + strain + + + + + 109760 + SPIPN + Spizellomyces punctatus + species + + + + + + 1123529 + GONPR + Gonapodya prolifera + A. Fisch. 1892 + Aquatic fungus + species + http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg + + + + + + + 73868 + PIRSE + Piromyces sp. (strain E2) + species + http://www.bsu.edu/classes/ruch/msa/barr/4-17.jpg + + + + + + 6029 + Microsporidia + phylum + + + Disseminated Infection Caused by Novel Species of Microsporidium, Thailand + + + + 6032 + Apansporoblastina + suborder + + + + 6033 + Encephalitozoon + genus + + + + 284813 + ENCCU + Encephalitozoon cuniculi (strain GB-M1) + Microsporidian parasite + strain + http://www.nature.com/modpathol/journal/v15/n5/images/3880566f7.jpg + + + + + 907965 + ENCHA + Encephalitozoon hellem (strain ATCC 50504) + Microsporidian parasite + strain + http://ruby.fgcu.edu/courses/davidb/50249/web/Encephalitozoonhellem91.jpg + + + + + Nosematidae & Enterocytozoonidae + + + 993615 + VITCO + Vittaforma corneae (strain ATCC 50505) + Microsporidian parasite + Nosema corneum + + + + + 481877 + ENTBH + Enterocytozoon bieneusi (strain H348) + Microsporidian parasite + http://www.biolib.cz/IMG/GAL/17310.jpg + + + + + + + 35232 + Pleistophoridae + family + + + + 72359 + TRAHO + Trachipleistophora hominis + Microsporidian parasite + species + + + + + 948595 + VAVCU + Vavraia culicis (isolate floridensis) + Microsporidian parasite + + + + + + 1003232 + EDHAE + Edhazardia aedis (strain USNM 41457) + Microsporidian parasite + http://wwx.inhs.illinois.edu/files/6813/4021/9153/4Edhazardia_aedis.jpg + + + + + + + 1001604 + Nucleariidae and Fonticula group + + + Phylogeny of the �Forgotten� Cellular Slime Mold, Fonticula alba, Reveals a Key Evolutionary Branch within Opisthokonta + + + + 691883 + FALXX + Fonticula alba + Worley, Raper & Hohl. 1979 + species + http://mbe.oxfordjournals.org/content/26/12/2699/F2.medium.gif + + + + + 154970 + Nuclearia simplex + species + + + + + + + + 554915 + Amoebozoa + + + + 33083 + Dictyosteliida + dictyostelid cellular slime molds + order + + + + 5782 + Dictyostelium + genus + + + An expanded phylogeny of social amoebas (Dictyostelia) shows increasing diversity and new morphological patterns + + + + + + + group 4 + + + 44689 + DICDI + Dictyostelium discoideum + Slime mold + species + http://www.tins.ne.jp/~tsukubagec/csm.GIF + + + + + 5786 + DICPU + Dictyostelium purpureum + Slime mold + species + + + + + + 1054147 + DICFS + Dictyostelium fasciculatum (strain SH3) + Slime mold + strain + + + + + + 13642 + POLPA + Polysphondylium pallidum + Cellular slime mold + species + http://cosmos.bot.kyoto-u.ac.jp/csm/photos2/Pp8s.jpeg + + + + + + 5758 + Entamoeba + genus + + + + 5759 + ENTHI + Entamoeba histolytica + species + http://www.dpd.cdc.gov/dpdx/images/ParasiteImages/A-F/Amebiasis/E_histo/Ehistdisp_troph_wtmt2.jpg + + + + + 370354 + ENTDS + Entamoeba dispar (strain ATCC PRA-260 / SAW760) + + + + + + + Bikonta + + + + Plants+HC+SAR megagroup + + Plants+HC + + Archaeplastida + + + 33090 + Viridiplantae + green plants + kingdom + + + + 3193 + Embryophyta + + + + 58023 + Tracheophyta + vascular plants + + + + 58024 + Spermatophyta + seed plants + + + + 3398 + Magnoliophyta + flowering plants + Angiospermae + + + + 71240 + eudicotyledons + + + + 91827 + core eudicotyledons + + + + 71275 + rosids + subclass + + + fabids & malvids + + + 91835 + fabids + + + Rosales & Cucurbitales & Fabales + + Rosales & Cucurbitales + + + 3745 + Rosaceae + family + + + + 57918 + FRAVE + Fragaria vesca + Woodland strawberry + Fragaria vesca L. + European strawberry + alpine strawberry + species + http://www.boga.ruhr-uni-bochum.de/html/Fragaria.vesca.ja6.jpg + http://caliban.mpiz-koeln.mpg.de/thome/band3/tafel_092_small.jpg + + + + + 3760 + PRUPE + Prunus persica + Peach + Persica vulgaris + Amygdalus persica + species + http://www.mezhenskyjv.narod.ru/foto_sortov/dokaz.jpg + + + + + + 3659 + CUCSA + Cucumis sativus + Cucumber + species + + + + + + 3814 + Papilionoideae + subfamily + + + + 3847 + SOYBN + Glycine max + cv. Wye + Soybean + Glycine hispida + species + + + + + 3880 + MEDTR + Medicago truncatula + Barrel medic + Medicago tribuloides + species + http://crdp.ac-besancon.fr/flore/FABACEAE/photos/medicago_truncatula_30.jpg + + + + + + + 3646 + Malpighiales + order + + + + 3977 + Euphorbiaceae + family + + + + 3983 + MANES + Manihot esculenta + Tapioca + Jatropha manihot + species + http://upload.wikimedia.org/wikipedia/commons/9/99/Iwata_kenichi_cassava.jpg + + + + + 3988 + RICCO + Ricinus communis + Castor bean + Ricinus sanguineus + species + http://nmorganics.net/wp-content/uploads/2011/09/castor.jpg + + + + + + 3694 + POPTR + Populus trichocarpa + Western balsam poplar + Populus balsamifera subsp. trichocarpa + species + + + + + + + 91836 + malvids + + + Brassicales & Sapindales + + + 3699 + Brassicales + order + + + + 3700 + Brassicaceae + family + + + + 3701 + Arabidopsis + genus + + + + 59689 + ARALY + Arabidopsis lyrata + Lyre-leaved rock-cress + Arabis lyrata + species + + + + + 3702 + ARATH + Arabidopsis thaliana + Mouse-ear cress + species + + + + + + 98038 + THEHA + Thellungiella halophila + Salt cress + species + http://mplant.oxfordjournals.org/content/2/1/3/F1.large.jpg + + + + + + 3649 + CARPA + Carica papaya + Papaya + species + http://www.biopix.com/photos/jko-carica-papaya-00412.jpg + http://www.texasriviera.com/greenthumbs/papaya10.jpg + + + + + + 2706 + Citrus + genus + + + + 85681 + CCLXX + Citrus clementina + Citrus clementina hort. ex Tanaka + species + http://www.citrusgenomedb.org/sites/default/files/tripal/tripal_organism/images/Citrus_clementina.jpg + + + + + 2711 + CITSI + Citrus sinensis + Sweet orange + Citrus x sinensis + Citrus aurantium var. sinensis + species + http://www.west-crete.com/flowers/photos/citrus_sinensis-1.jpg + + + + + + + 71139 + EUCGR + Eucalyptus grandis + Flooded gum + species + http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg + + + + + + + 582304 + VITVI + Vitis vinifera + Grape + species + + + + + + 91888 + lamiids + + + + 4070 + Solanaceae + family + + + + 4107 + Solanum + genus + + + + 49274 + Lycopersicon + subgenus + + + + 4081 + SOLLC + Solanum lycopersicum + Tomato + Lycopersicon esculentum + species + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0905/1214.jpeg + + + + + 4084 + SOLPI + Solanum pimpinellifolium + Currant tomato + Lycopersicon pimpinellifolium + species + http://upload.wikimedia.org/wikipedia/commons/b/b8/Currant_tomato.jpg + + + + + + 4113 + SOLTU + Solanum tuberosum + Potato + species + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0508/0344.jpeg + + + + + + 4097 + TOBAC + Nicotiana tabacum + Common tobacco + species + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0105/2073.jpeg + + + + + + 4155 + MIMGU + Mimulus guttatus + Yellow monkey flower + Yellow monkey flower + species + + + + + + + 218851 + AQUCA + Aquilegia caerulea + E.James + Rocky mountain columbine + Aquilegia coerulea + species + http://www.wildflower.org/image_archive/320x240/PCD3618/PCD3618_IMG0033.JPG + + + + + + 4447 + Liliopsida + monocots + Monocotyledoneae + class + + + + 4479 + Poaceae + grass family + Gramineae + family + + + + 147369 + Panicoideae + Link, 1827 + Centothecoideae + subfamily + + + + 147429 + Andropogoneae + Dumort., 1824 + tribe + + + + 4558 + SORBI + Sorghum bicolor + Sorghum + Sorghum vulgare + species + + + + + 4577 + MAIZE + Zea mays + Maize + species + + + + + + 147428 + Paniceae + tribe + + + + 38727 + PANVG + Panicum virgatum + switchgrass + species + http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/PanicumVirgatum.jpg/220px-PanicumVirgatum.jpg + + + + + 4555 + SETIT + Setaria italica + Foxtail millet + Panicum italicum + species + http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg + + + + + + + 359160 + BEP clade + + + + 4527 + Oryza + genus + + + + 4530 + ORYSA + Oryza sativa + Rice + species + + + + + 39947 + ORYSJ + Oryza sativa subsp. japonica + Rice + + + + + + 147368 + Pooideae + subfamily + + + + 15368 + BRADI + Brachypodium distachyon + Purple false brome + Trachynia distachya + species + http://upload.wikimedia.org/wikipedia/commons/0/01/Brachypodium_distachyon_Bd21-3.jpg + + + + + 112509 + HORVD + Hordeum vulgare var. distichum + Two-rowed barley + subspecies + http://www.missouriplants.com/Grasses/Hordeum_vulgare_plant.jpg + + + + + + + + 214687 + MUSAM + Musa acuminata subsp. malaccensis + (Ridl.) N.W.Simmonds + Wild banana + Musa malaccensis + subspecies + http://farm5.staticflickr.com/4009/4572831376_07ca3089d1_z.jpg + + + + + + + 3329 + PICAB + Picea abies + H.Karst + Norway spruce + Picea excelsa + species + http://pharm1.pharmazie.uni-greifswald.de/allgemei/serturn/arzpfl-b/picea_a.jpg + + + + + + 88036 + SELML + Selaginella moellendorffii + Hieron + Spikemoss + species + http://www.plantsystematics.org/users/robbin/5_22_06/upload121/Selag_moellendorffii3.JPG + + + + + + 145481 + PHYPA + Physcomitrella patens subsp. patens + Moss + subspecies + http://www.aua.gr/plantdevelopment/Photos2/01%20Physcomitrella%20patens.jpg + + + + + + 3041 + Chlorophyta + phylum + + + + 13792 + Mamiellales + order + + + + 70447 + Ostreococcus + genus + + + + 436017 + OSTLU + Ostreococcus lucimarinus (strain CCE9901) + + + + + 385169 + ORCXX + Ostreococcus sp. RCC809 + species + + + + + 70448 + OSTTA + Ostreococcus tauri + species + http://genome.jgi-psf.org/Ost9901_3/Ostta.jpg + + + + + + 38832 + Micromonas + genus + + + + 564608 + MICPC + Micromonas pusilla (strain CCMP1545) + Picoplanktonic green alga + http://www.mansfield.ohio-state.edu/~sabedon/microfla.jpg + + + + + 296587 + MICSR + Micromonas sp. (strain RCC299 / NOUM17) + Picoplanktonic green alga + Micromonas sp. RCC299 + species + + + + + + Trebouxiophyceae & Chlorophyceae + + + 75966 + Trebouxiophyceae + class + + + + 763042 + ASCXX + Asterochloris sp. Cgr/DA1pho + species + http://genome.jgi-psf.org/Astpho1/Figure_3.jpg + + + + + 554065 + CHLVA + Chlorella variabilis + Shihira & Krauss 1965 + Green alga + Chlorella sp. NC64A + Chlorella sp. Bnd1-ZK + species + http://www.sinice.cz/res/image/collection/Chlorella.jpg + + + + + 574566 + CSUXX + Coccomyxa subellipsoidea C-169 + Chlorella vulgaris C-169 + Coccomyxa sp. C-169 + species + http://genome.jgi.doe.gov/Coc_C169_1/Chlvu.jpg + + + + + + 3042 + Chlamydomonadales + order + + + + 3055 + CHLRE + Chlamydomonas reinhardtii + Chlamydomonas smithii + species + http://genome.jgi-psf.org/Chlre3/chlamy_BG.gif + + + + + 3067 + VOLCA + Volvox carteri + Green alga + species + http://genome.jgi-psf.org/Volca1/Volvox.jpg + + + + + + + + + 2763 + Rhodophyta + red algae + + + + 265316 + Cyanidiaceae + family + + + + 45157 + CYAME + Cyanidioschyzon merolae + Red alga + species + http://www.shigen.nig.ac.jp/algae_tree/CyanidiophyceaeIMG.jpg + + + + + 130081 + GALSU + Galdieria sulphuraria + Red alga + species + http://phenomena.nationalgeographic.com/files/2013/03/Alga.jpg + + + + + + 2769 + CHOCR + Chondrus crispus + Carragheen moss + Irish moss + species + http://www.seaweed.ie/_images/MG3_0485.png + + + + + + 38254 + Glaucocystophyceae + Glaucophyta + class + + + + 2762 + CYAPA + Cyanophora paradoxa + species + http://www.people.vcu.edu/~rfisher/paradoxa.jpg + + + + + 38271 + Glaucocystis nostochinearum + species + http://protist.i.hosei.ac.jp/pdb/images/Others/Glaucocystis/sp_02.jpg + + + + + + Hacrobia (Cryptophyta & Haptophyceae & Centroheliozoa) + + + 2903 + EMIHU + Emiliania huxleyi + Pontosphaera huxleyi + species + http://research.kahaku.go.jp/zoology/kaisei/hp-2/images/hapto.jpg + + + + + 55529 + GUITH + Guillardia theta + Cryptomonas phi + species + http://genome.jgi.doe.gov/public/Guith1/Gtheta_SEM.jpg + + + Multiple Gene Phylogenies Support the Monophyly of Cryptomonad and Haptophyte Host Lineages + + + + + + + + Stramenopiles & Alveolata & Rhizaria + + Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists + + + + + Stramenopiles & Alveolata + + + 33630 + Alveolata + + + Spliced Leader RNAs, Mitochondrial Gene Frameshifts and Multi-Protein Phylogeny Expand Support for the Genus Perkinsus as a Unique Group of Alveolates + + + Myzozoa + + + 5794 + Apicomplexa + phylum + + + The origins of apicomplexan sequence innovation (2009) + + + + + Aconoidasida & Coccidia + + + 422676 + Aconoidasida + class + + + + 5820 + Plasmodium + genus + + + + 5825 + PLACH + Plasmodium chabaudi + species + + + + + 36329 + PLAF7 + Plasmodium falciparum (isolate 3D7) + + + + + 73239 + PLAYO + Plasmodium yoelii yoelii + subspecies + + + + + 126793 + PLAVS + Plasmodium vivax (strain Salvador I) + + + + + + 5863 + Piroplasmida + Piroplasmids + + + Theileria + + 5873 + Theileria + genus + + + + 5874 + THEAN + Theileria annulata + species + + + + + 5875 + THEPA + Theileria parva + East coast fever infection agent + species + + + + + + 5865 + BABBO + Babesia bovis + species + http://www.perulactea.com/wp-content/uploads/2012/03/Babesia_bovis.jpg + + + + + + + 423054 + Eimeriorina + suborder + + + The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees + + + + + + 5802 + EIMTE + Eimeria tenella + Coccidian parasite + species + http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg + + + + + 5811 + TOXGO + Toxoplasma gondii + species + + + + + + + 5806 + Cryptosporidium + genus + + + + 237895 + CRYHO + Cryptosporidium hominis + species + + + + + 5807 + CRYPV + Cryptosporidium parvum + species + + + + + 353152 + CRYPI + Cryptosporidium parvum (strain Iowa II) + + + + + + Dinoflagellates & Perkinsus + + + 2864 + Dinophyceae + class + + + + 2866 + CRYCO + Crypthecodinium cohnii + Dinoflagellate + species + http://www.lamolina.net/image/DHAcell.jpg + + + + + 2923 + THOHE + Thoracosphaera heimii + Dinoflagellate + species + http://planktonnet.awi.de/repository/rawdata-PlanktonNet2/viewable/fjouenne_21806a_20080123172436_small.jpg + + + + + + 423536 + PERM5 + Perkinsus marinus (strain ATCC 50983 / TXsc) + http://www.eurl-mollusc.eu/var/storage/images/medias-ifremer/medias-crlmollusc/images/perkinsus-zoosporangium/633746-1-eng-GB/Perkinsus-zoosporangium.jpg + + + + + + + 5878 + Ciliophora + + + + 431838 + Intramacronucleata + subphylum + + + + 6020 + Oligohymenophorea + class + + + + 31277 + Hymenostomatida + order + + + + 857967 + ICHMG + Ichthyophthirius multifiliis (strain G5) + White spot disease agent + Ich + http://www.vet.cornell.edu/microbiology/FishDisease/aquaticprog/highlights/ich/ICH2.JPG + + + + + 312017 + TETTS + Tetrahymena thermophila (strain SB210) + http://upload.wikimedia.org/wikipedia/commons/thumb/0/08/Tetrahymena_thermophila.png/220px-Tetrahymena_thermophila.png + + + + + + 5888 + PARTE + Paramecium tetraurelia + species + http://research.plattsburgh.edu/ciliates/images/jdopics208.jpg + + + + + + 1172189 + OTRXX + Oxytricha trifallax + Stein, 1859 + species + http://centexnaturalist.com/foldermainmenus/sfprotists/folderprotozoans/oxytricha04.gif + + + + + + 5961 + BLEJA + Blepharisma japonicum + species + http://upload.wikimedia.org/wikipedia/commons/2/23/Mikrofoto.de-Blepharisma_japonicum_15.jpg + http://protist.i.hosei.ac.jp/PDB/PCD0473/C/016.jpg + + + + + + + 33634 + Stramenopiles + Patterson 1989, emend. Adl et al. 2005 + Chromophyta + heterokonts + Heterokontophyta + + + Labyrinthulomycetes & Ochrophyta & Oomycetes + + Ochrophyta & Oomycetes + + Seven Gene Phylogeny of Heterokonts + + + + + + Ochrophyta + + + + 2836 + Bacillariophyta + diatoms + class + + + + 33850 + Bacillariophycidae + + + + 186039 + FCYXX + Fragilariopsis cylindrus + Krieger + Nitzschia cylindrus + species + http://www.awi.de/fileadmin/user_upload/News/Press_Releases/2012/1._Quartal/000_Fragilariposis_Chloroplasten_GDieckmann_w.jpg + + + + + 2850 + PHATR + Phaeodactylum tricornutum + Bohlin + species + http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Phaeodactylum_tricornutum.png/637px-Phaeodactylum_tricornutum.png + + + + + + 35127 + Thalassiosira + genus + + + + 35128 + THAPS + Thalassiosira pseudonana + Hasle & Heimdal + Marine diatom + Cyclotella nana + species + http://www.genomenewsnetwork.org/gnn_images/sequenced_genomes/thalassiosira_pseudonana.jpg + + + + + 159749 + THAOC + Thalassiosira oceanica + Marine diatom + species + + + + + + Pelagophyceae & Phaeophyceae + + Distribution patterns and phylogeny of marine stramenopiles in the north pacific ocean + + + + + + 44056 + AURAN + Aureococcus anophagefferens + Hargraves & Sieburth + Harmful bloom alga + species + http://www.dec.ny.gov/images/fish_marine_images/alex1.jpg + + + + + 2880 + ECTSI + Ectocarpus siliculosus + Brown alga + species + http://www.research.kobe-u.ac.jp/rcis-ku-macc/j.p.folder/photo/KU-1110%20Ectocarpus%20siliculosus%20b%20x20.jpg + + + + + + + 4762 + Oomycetes + + + + 4776 + Peronosporales + order + + + + 4783 + Phytophthora + genus + + + + 4787 + PHYIN + Phytophthora infestans + (Mont.) de Bary 1876 + Potato late blight fungus + species + http://bioweb.uwlax.edu/bio203/s2007/benrud_jaco/index_files/image4901.jpg + + + + + 164328 + PHYRM + Phytophthora ramorum + Sudden oak death agent + species + http://genome.jgi-psf.org/Phyra1_1/pramorum.jpg + + + + + 67593 + PHYSO + Phytophthora sojae + Soybean stem and root rot agent + Phytophthora megasperma f. sp. glycines + species + http://www.apsnet.org/publications/imageresources/PublishingImages/2003/IW000025b.jpg + + + + + 4785 + PHYCI + Phytophthora cinnamomi + Cinnamon fungus + species + http://genome.jgi.doe.gov/public/Phyci1/Pcinnamomi_hyphae_and_chlamydospores.jpg + + + + + 4784 + PHYCP + Phytophthora capsici + species + http://upload.wikimedia.org/wikipedia/commons/2/24/Phytophthora_capsici_sporangia.jpg + + + + + + 559515 + HYAAE + Hyaloperonospora arabidopsidis (strain Emoy2) + Downy mildew agent + Peronospora arabidopsidis + http://www.nature.com/nature/journal/v470/n7332/images/470044a-f1.2.jpg + + + + + + 65071 + PYTUL + Pythium ultimum + species + http://www.plantpath.cornell.edu/labs/enelson/images/Germ_Sporangia(small).jpg + + + + + + + 33674 + Thraustochytriaceae + Thraustochytriales + family + + + + 702273 + AKEXX + Aplanochytrium kerguelense PBS07 + http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Aplanolm.jpg/120px-Aplanolm.jpg + + + + + 876976 + SAGXX + Schizochytrium aggregatum ATCC 28209 + http://genome.jgi-psf.org/public/Schag1/120124-ATCC28209-22.JPG + + + + + 87102 + ALIXX + Aurantiochytrium limacinum + Schizochytrium limacinum + species + http://upload.wikimedia.org/wikipedia/commons/3/38/Aurantiochytrium_limacinum_SR21.jpg + + + + + + + 12968 + BLAHO + Blastocystis hominis + species + + + + + + + 543769 + Rhizaria + + + + 71427 + Allogromia laticollaris + species + http://forambarcoding.unige.ch/system/pictures/424/s600/A.laticollaris1.jpg + + + + + 227086 + BIGNA + Bigelowiella natans + Pedinomonas minutissima + Chlorarachnion sp. (strain CCMP621) + Pedinomonas minutissima + species + http://genome.jgi.doe.gov/Bigna1/Bigna1.jpg + + + + + + + Excavata + + + + Kinetoplastida & Heterolobosea + + + 5653 + Kinetoplastida + kinetoplasts + order + + + + 5654 + Trypanosomatidae + family + + + + 5690 + Trypanosoma + genus + + + + 999953 + TRYB2 + Trypanosoma brucei brucei (strain 927/4 GUTat10.1) + strain + + + + + 5693 + TRYCR + Trypanosoma cruzi + species + http://upload.wikimedia.org/wikipedia/commons/thumb/0/0b/Trypanosoma_cruzi_crithidia.jpeg/220px-Trypanosoma_cruzi_crithidia.jpeg + + + + + + 5658 + Leishmania + genus + + + + 5664 + LEIMA + Leishmania major + species + + + + + 5671 + LEIIN + Leishmania infantum + species + + + + + 5660 + LEIBR + Leishmania braziliensis + species + + + + + + + 75058 + BODSA + Bodo saltans + Flagellated protozoan + species + http://protist.i.hosei.ac.jp/pdb/images/Mastigophora/Bodo/sp_1f.jpg + + + + + + 5762 + NAEGR + Naegleria gruberi + Amoeba + species + http://media.npr.org/assets/news/2010/03/05/amoeba_custom-a24a7e20b8d9f1b681cf6a25d0d046d84f238349-s3.jpg + + + + + Metamonada + + + 184922 + GIAIC + Giardia intestinalis (strain ATCC 50803 / WB clone C6) + Giardia intestinalis (strain ATCC 50803 / WB clone C6) + Giardia lamblia + species + + + + + 5722 + TRIVA + Trichomonas vaginalis + species + + + + + + + 554296 + Apusozoa + + + Planomonadida ord. nov. (Apusozoa): Ultrastructural Affinity with Micronuclearia podoventralis and Deep Divergences within Planomonas gen. nov + + + + 554453 + Planomonas micra + (Cavalier-Smith, 2008) Heiss, Walker & Simpson 2010 + Apusomonadidae sp. micra + species + + + + + 529818 + TTRXX + Thecamonas trahens + Larsen & Patterson 1990 + Amastigomonas trahens + species + http://bioinformatica.upf.edu/2011/projectes11/Cx/images/pro_t_tra.jpg + + + + + + + + 2157 + Archaea + superkingdom + + + a_62 + + a_56 + + + 28890 + Euryarchaeota + phylum + + + a_44 + + a_28 + + a_26 + + + 224756 + Methanomicrobia + class + + + a_14 + + a_12 + + + 2206 + Methanosarcinaceae + family + + + + 2207 + Methanosarcina + genus + + + a_2 + + + 2214 + METAC + Methanosarcina acetivorans + species + + + + + 269797 + METBF + Methanosarcina barkeri (strain Fusaro / DSM 804) + + + + + + 2209 + METMA + Methanosarcina mazei + Methanosarcina frisia + species + + + + + + 259564 + METBU + Methanococcoides burtonii (strain DSM 6242) + + + + + a_11 + + 2191 + Methanomicrobiales + order + + + a_9 + + + 456442 + METB6 + Methanoregula boonei (strain 6A8) + + + + + 2203 + METHU + Methanospirillum hungatei + species + + + + + + 368407 + METMJ + Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) + + + + + + + 410358 + METLZ + Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) + + + + + + 349307 + METTP + Methanosaeta thermophila (strain DSM 6194 / PT) + Methanothrix thermophila (strain DSM 6194 / PT) + + + + + + 2236 + Halobacteriaceae + family + + + a_23 + + a_19 + + + 2238 + HALMA + Haloarcula marismortui + Halobacterium marismortui + species + + + + + 2257 + NATPH + Natronomonas pharaonis + Natronobacterium pharaonis + species + + + + + a_22 + + 2239 + Halobacterium + genus + + + + 478009 + HALS3 + Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) + + + + + 2243 + HALSP + Halobacterium sp. + species + + + + + + + 362976 + HALWD + Haloquadratum walsbyi (strain DSM 16790) + + + + + + + 224325 + ARCFU + Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) + strain + + + + + a_43 + + a_41 + + + 2182 + Methanococcales + order + + + a_31 + + + 2190 + METJA + Methanocaldococcus jannaschii + Methanococcus jannaschii + species + + + + + 419665 + META3 + Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) + + + + + a_34 + + 2184 + Methanococcus + genus + + + + 39152 + METMP + Methanococcus maripaludis + Methanococcus deltae + species + + + + + 406327 + METVS + Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) + + + + + + a_40 + + 2159 + Methanobacteriaceae + family + + + a_38 + + + 420247 + METS3 + Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) + + + + + 339860 + METST + Methanosphaera stadtmanae (strain DSM 3091) + + + + + + 187420 + METTH + Methanobacterium thermoautotrophicum + Methanobacterium thermoautotrophicum + + + + + + + 2320 + METKA + Methanopyrus kandleri + species + + + + + + + 2259 + Thermococcaceae + family + + + PYRFU & THEKO & PYRAB & PYRHO + + PYRFU & THEKO + + + 2261 + PYRFU + Pyrococcus furiosus + species + + + + + 69014 + THEKO + Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) + Pyrococcus kodakaraensis (strain KOD1) + + + + + + 2260 + Pyrococcus + genus + + + + 29292 + PYRAB + Pyrococcus abyssi + species + + + + + 53953 + PYRHO + Pyrococcus horikoshii + species + + + + + + + 523850 + THEON + Thermococcus onnurineus (strain NA1) + + + + + + a_55 + + + 228908 + NANEQ + Nanoarchaeum equitans (strain Kin4-M) + + + + + 436308 + NITMS + Nitrosopumilus maritimus (strain SCM1) + + + + + + + 2301 + Thermoplasmatales + order + + + a_59 + + 2302 + Thermoplasma + genus + + + + 273075 + THEAC + Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) + + + + + 273116 + THEVO + Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / IFO 15438 / JCM 9571 / GSS1) + + + + + + 263820 + PICTO + Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) + + + + + + a_93 + + + 183924 + Thermoprotei + class + + + a_83 + + a_81 + + + 2267 + Thermoproteaceae + family + + + a_71 + + a_67 + + 2276 + Pyrobaculum + genus + + + a_65 + + + 340102 + PYRAR + Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) + + + + + 410359 + PYRCJ + Pyrobaculum calidifontis (strain JCM 11548 / VA1) + + + + + + 13773 + PYRAE + Pyrobaculum aerophilum + species + + + + + a_70 + + + 384616 + PYRIL + Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) + + + + + 444157 + THENV + Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) + Thermoproteus neutrophilus + + + + + + + 397948 + CALMQ + Caldivirga maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167) + + + + + a_80 + + 118883 + Sulfolobaceae + family + + + a_78 + + 2284 + Sulfolobus + genus + + + a_76 + + + 2285 + SULAC + Sulfolobus acidocaldarius + species + + + + + 273063 + SULTO + Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) 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