From: Jim Procter <jprocter@issues.jalview.org>
Date: Mon, 26 Sep 2016 10:40:57 +0000 (+0100)
Subject: JAL-1950 avoid NPE when archScore is null
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=ba947355e5c575d800d4ea43dd5af7aac10125a6;p=jalview.git

JAL-1950 avoid NPE when archScore is null
---

diff --git a/src/jalview/ws/ebi/HmmerJSONProcessor.java b/src/jalview/ws/ebi/HmmerJSONProcessor.java
index a3eecd3..428c498 100644
--- a/src/jalview/ws/ebi/HmmerJSONProcessor.java
+++ b/src/jalview/ws/ebi/HmmerJSONProcessor.java
@@ -181,7 +181,9 @@ public class HmmerJSONProcessor
           hitseq.addSequenceFeature(new SequenceFeature(
                   "Pfam Domain Architecture", (hmmrhit.get("archindex"))
                           + " " + (arch = (String) hmmrhit.get("arch")), 0,
-                  0, Integer.valueOf((String) hmmrhit.get("archScore")),
+                  0,
+                  (hmmrhit.get("archScore") != null ? Integer
+                          .valueOf((String) hmmrhit.get("archScore")) : 0f),
                   "HMMER3"));
           addArchGroup(hitseq, arch);
           alipp.setScore(Double.valueOf("" + dhit.get("bitscore")));