From: Jim Procter <jprocter@issues.jalview.org>
Date: Mon, 12 Dec 2016 21:05:18 +0000 (+0000)
Subject: JAL-2349 method to get contact intensity for given site
X-Git-Tag: Release_2_11_3_0~23^2~60^2~9^2~21
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=baf9d356eef7f851cc6c208ebc89a0f594e470c8;p=jalview.git

JAL-2349 method to get contact intensity for given site
---

diff --git a/src/jalview/datamodel/ContactListI.java b/src/jalview/datamodel/ContactListI.java
index c08c07b..4d5142a 100644
--- a/src/jalview/datamodel/ContactListI.java
+++ b/src/jalview/datamodel/ContactListI.java
@@ -11,4 +11,13 @@ public interface ContactListI
 
   Color getColorForScore(int column);
 
+  
+  /**
+   * get a value representing contact at column for this site
+   * 
+   * @param column
+   * @return
+   */
+  double getContactAt(int column);
+
 }
diff --git a/src/jalview/datamodel/ContactMatrixTest.java b/src/jalview/datamodel/ContactMatrixTest.java
index ab76c76..b978d8f 100644
--- a/src/jalview/datamodel/ContactMatrixTest.java
+++ b/src/jalview/datamodel/ContactMatrixTest.java
@@ -33,6 +33,13 @@ public class ContactMatrixTest implements ContactMatrixI
       public int getContactHeight()
       {
         return width;
+
+      }
+
+      @Override
+      public double getContactAt(int column)
+      {
+        return Math.abs(column - p);
       }
     };
   }