From: Jim Procter <jprocter@issues.jalview.org>
Date: Wed, 26 Jun 2019 16:43:34 +0000 (+0100)
Subject: JAL-3334 fix - always load full SO to resolve the sequence features from Ensembl... 
X-Git-Tag: Release_2_11_0~4^2~1^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=bb1629fd423f5ce90ca1a951f10e9183fbbbc8d0;p=jalview.git

JAL-3334 fix - always load full SO to resolve the sequence features from Ensembl correctly
---

diff --git a/src/jalview/bin/Jalview.java b/src/jalview/bin/Jalview.java
index e72390b..02e53ec 100755
--- a/src/jalview/bin/Jalview.java
+++ b/src/jalview/bin/Jalview.java
@@ -331,7 +331,7 @@ public class Jalview
      * configure 'full' SO model if preferences say to, else use the default (SO
      * Lite)
      */
-    if (Cache.getDefault("USE_FULL_SO", false))
+    if (Cache.getDefault("USE_FULL_SO", true))
     {
       SequenceOntologyFactory.setInstance(new SequenceOntology());
     }