From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Wed, 6 Jul 2011 09:48:55 +0000 (+0100)
Subject: ensure selseq is trimmed to just sequences included in view (either all
X-Git-Tag: Release_2_7~146
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=bb2e1279398313648ae443a924cc9791bbbd17cd;p=jalview.git

ensure selseq is trimmed to just sequences included in view (either all
or just selectedRegionOnly) (JAL-724)
---

diff --git a/src/jalview/datamodel/AlignmentView.java b/src/jalview/datamodel/AlignmentView.java
index 2a93861..ebe8301 100644
--- a/src/jalview/datamodel/AlignmentView.java
+++ b/src/jalview/datamodel/AlignmentView.java
@@ -107,7 +107,7 @@ public class AlignmentView
     {
       Vector sel = selection.getSequences(null);
       this.selected = new Vector();
-      selseqs = selection.getSequencesInOrder(alignment, false);
+      selseqs = selection.getSequencesInOrder(alignment, selectedRegionOnly);
     }
     else
     {