From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Sat, 5 Jan 2013 00:03:18 +0000 (+0000)
Subject: inprogress
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=bb5057ba057d5b76362e1c27af04d4ec04feb753;p=jalview.git

inprogress
---

diff --git a/forester/ruby/evoruby/lib/evo/tool/hmmscan_summary.rb b/forester/ruby/evoruby/lib/evo/tool/hmmscan_summary.rb
index 75f5dd8..92bceb2 100644
--- a/forester/ruby/evoruby/lib/evo/tool/hmmscan_summary.rb
+++ b/forester/ruby/evoruby/lib/evo/tool/hmmscan_summary.rb
@@ -320,8 +320,7 @@ module Evoruby
           end
         end
       end
-      puts hmm_for_protein_output
-      puts hmmscan_results_per_protein
+    
       if !hmm_for_protein_output.empty? && !hmmscan_results_per_protein.empty?
         process_hmmscan_results_per_protein( hmmscan_results_per_protein,
           fs_e_value_threshold,
@@ -362,7 +361,7 @@ module Evoruby
         uniprotkb,
         species      )
       
-      puts "+"
+    
 
       dc = 0
       # filter according to i-Evalue threshold
@@ -370,6 +369,9 @@ module Evoruby
       hmmscan_results_per_protein_filtered = []
 
       hmmscan_results_per_protein.each do | r |
+        
+        puts r
+        
         if r.model == hmm_for_protein_output
           if r.fs_e_value > fs_e_value_threshold
             return