From: jprocter <Jim Procter>
Date: Wed, 2 May 2007 14:30:02 +0000 (+0000)
Subject: public debug report log message to gather any cases where Das coordinate frame mappin... 
X-Git-Tag: Release_2_3~72
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=bc7f494552068121b933b776b621a68fe2591647;p=jalview.git

public debug report log message to gather any cases where Das coordinate frame mapping fails
---

diff --git a/src/jalview/io/DasSequenceFeatureFetcher.java b/src/jalview/io/DasSequenceFeatureFetcher.java
index 58ae580..2f94d64 100755
--- a/src/jalview/io/DasSequenceFeatureFetcher.java
+++ b/src/jalview/io/DasSequenceFeatureFetcher.java
@@ -374,7 +374,19 @@ public class DasSequenceFeatureFetcher
                   source.getNickname());
               if (dbref.getMap()!=null && f.getBegin()>0 && f.getEnd()>0) {
                 Cache.log.debug("mapping from "+f.getBegin()+" - "+f.getEnd());
-                SequenceFeature vf[] = dbref.getMap().locateFeature(f);
+                SequenceFeature vf[]=null;
+                
+                try {
+                  vf = dbref.getMap().locateFeature(f);
+                }
+                catch (Exception ex)
+                {
+                  Cache.log.info("Error in 'experimental' mapping of features. Please try to reproduce and then report info to help@jalview.org.");
+                  Cache.log.info("Mapping feature from "+f.getBegin()+" to "+f.getEnd()+" in dbref "+dbref.getAccessionId()+" in "+dbref.getSource());
+                  Cache.log.info("using das Source "+ds.getUrl());
+                  Cache.log.info(ex);
+                }
+                
                 if (vf!=null) {
                   for (int v=0;v<vf.length;v++)
                   {