From: jprocter <Jim Procter>
Date: Tue, 26 Aug 2008 10:09:55 +0000 (+0000)
Subject: uses shared singleton from jalview.gui.SequenceFetcher (consider revising so an insta... 
X-Git-Tag: Release_2_4~7
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=bc9b9a3dc799adc3d14ef23115074c8871d2746d;p=jalview.git

uses shared singleton from jalview.gui.SequenceFetcher (consider revising so an instance of jalview.ws.SequenceFetcher is passed to constructor)
---

diff --git a/src/jalview/ws/DBRefFetcher.java b/src/jalview/ws/DBRefFetcher.java
index b007e13..82b411a 100644
--- a/src/jalview/ws/DBRefFetcher.java
+++ b/src/jalview/ws/DBRefFetcher.java
@@ -31,7 +31,9 @@ import jalview.ws.dbsources.Uniprot;
 import jalview.ws.ebi.EBIFetchClient;
 
 /**
- * DOCUMENT ME!
+ * Implements a runnable for validating a sequence 
+ * against external databases and then propagating 
+ * references and features onto the sequence(s)
  * 
  * @author $author$
  * @version $Revision$
@@ -80,7 +82,8 @@ public class DBRefFetcher implements Runnable
         ds[i] = seqs[i];
     }
     this.dataset = ds;
-    sfetcher = new SequenceFetcher();
+    // TODO Jalview 2.5 lots of this code should be in the gui package!
+    sfetcher = jalview.gui.SequenceFetcher.getSequenceFetcherSingleton(af); 
     // select appropriate databases based on alignFrame context.
     if (af.getViewport().getAlignment().isNucleotide())
     {