From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Thu, 1 Jun 2017 15:11:45 +0000 (+0100)
Subject: JAL-2526 zapCursor() renamed sequenceChanged()
X-Git-Tag: Release_2_10_3b1~214^2~4
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=bcd69929dba447593c10ed661545751727ad0b77;p=jalview.git

JAL-2526 zapCursor() renamed sequenceChanged()
---

diff --git a/src/jalview/commands/EditCommand.java b/src/jalview/commands/EditCommand.java
index 0a8dc7d..9eaeb7a 100644
--- a/src/jalview/commands/EditCommand.java
+++ b/src/jalview/commands/EditCommand.java
@@ -798,7 +798,7 @@ public class EditCommand implements CommandI
       AlignmentAnnotation[] tmp;
       for (int s = 0; s < command.seqs.length; s++)
       {
-        command.seqs[s].zapCursor();
+        command.seqs[s].sequenceChanged();
 
         if (modifyVisibility)
         {
diff --git a/src/jalview/datamodel/Sequence.java b/src/jalview/datamodel/Sequence.java
index 7ecb07a..6b460e2 100755
--- a/src/jalview/datamodel/Sequence.java
+++ b/src/jalview/datamodel/Sequence.java
@@ -1774,7 +1774,7 @@ public class Sequence extends ASequence implements SequenceI
    * token that has to match the one presented by the cursor
    */
   @Override
-  public void zapCursor()
+  public void sequenceChanged()
   {
     changeCount++;
   }
diff --git a/src/jalview/datamodel/SequenceI.java b/src/jalview/datamodel/SequenceI.java
index 0f78bdb..18f0948 100755
--- a/src/jalview/datamodel/SequenceI.java
+++ b/src/jalview/datamodel/SequenceI.java
@@ -522,7 +522,9 @@ public interface SequenceI extends ASequenceI
   List<SequenceFeature> findFeatures(int from, int to, String... types);
 
   /**
-   * Invalidate any cursors on the sequence (e.g. after an edit)
+   * Method to call to indicate that the sequence (characters or alignment/gaps)
+   * has been modified. Provided to allow any cursors on residue/column
+   * positions to be invalidated.
    */
-  public void zapCursor();
+  void sequenceChanged();
 }