From: jprocter
Date: Fri, 1 Aug 2008 13:22:21 +0000 (+0000)
Subject: update to feature list (more to come here for 2.4 release)
X-Git-Tag: Release_2_4~69
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=bddc7dcaf05c8c66801badea47ee9b0c55ba70eb;p=jalview.git
update to feature list (more to come here for 2.4 release)
---
diff --git a/help/html/releases.html b/help/html/releases.html
index a4c79c1..2159d7b 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -42,6 +42,8 @@
JPred3 web service
Generalised database reference retrieval and validation to
all fetchable databases
+ Fetch sequences from DAS sources supporting the sequence command
+ Sequence Fetcher GUI provides example accession numbers and 'clear' button
Application command line
- -tree parameter to open trees (introduced for passing from
@@ -87,6 +89,8 @@
- Debug flag for javacc
- .jalview_properties file is documented (slightly) in
jalview.bin.Cache
+ - Group colour can be given as an RGB triplet which is used to colour all non-gap characters
+
@@ -131,6 +135,9 @@
null pointer exceptions
Secondary structure lines are drawn starting from first
column of alignment
+ Uniprot XML import updated for new schema release in July 2008
+
+
|
diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html
index 003ba8b..fff6ed9 100755
--- a/help/html/whatsNew.html
+++ b/help/html/whatsNew.html
@@ -1,37 +1,48 @@
-
-
-What's new ?
-
-
-What's new ?
-
-Jalview Version 2.3
-
- Jmol 11.0.2 integration
- PDB views stored in Jalview XML files
- Slide sequences
- Edit sequence in place
- EMBL CDS features
- DAS Feature mapping
- Feature ordering
- Alignment Properties
- Annotation Scores
- Sort by scores
- Feature/annotation editing in applet
-
-Issues Resolved
-
- Headless state operation in 2.2.1
- Incorrect and unstable DNA pairwise alignment
- Cut and paste of sequences with annotation
- Feature group display state in XML
- Feature ordering in XML
- 2.2.1 applet had no feature transparency
- Number pad keys can be used in cursor mode
- Structure Viewer mirror image resolved
-
-
-See the Release History page for
-details of all new features and resolved issues.
-
-
+
+
+What's new ?
+
+
+What's new ?
+Jalview Version 2.4
+
+ VAMSAS Interoperation Client
+ DAS Sequence Fetching
+ DNA/Protein Product traversal (Experimental)
+ .. (more to come)
+
+Issues Resolved
+
+
+<--Jalview Version 2.3
+
+ Jmol 11.0.2 integration
+ PDB views stored in Jalview XML files
+ Slide sequences
+ Edit sequence in place
+ EMBL CDS features
+ DAS Feature mapping
+ Feature ordering
+ Alignment Properties
+ Annotation Scores
+ Sort by scores
+ Feature/annotation editing in applet
+
+Issues Resolved
+
+ Headless state operation in 2.2.1
+ Incorrect and unstable DNA pairwise alignment
+ Cut and paste of sequences with annotation
+ Feature group display state in XML
+ Feature ordering in XML
+ 2.2.1 applet had no feature transparency
+ Number pad keys can be used in cursor mode
+ Structure Viewer mirror image resolved
+
-->
+
+See the Release History page for
+details of all new features and resolved issues.
+
+