From: Jim Procter <jprocter@issues.jalview.org>
Date: Mon, 21 Nov 2016 11:28:01 +0000 (+0000)
Subject: JAL-1723 release notes and note in documentation about abbreviation of tooltip
X-Git-Tag: Release_2_10_1~11^2^2^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=be2d8070a1a5f6bdfc23ec8c340c06a1868e9752;p=jalview.git

JAL-1723 release notes and note in documentation about abbreviation of tooltip
---

diff --git a/help/html/io/exportseqreport.html b/help/html/io/exportseqreport.html
index ba97557..3f6a058 100644
--- a/help/html/io/exportseqreport.html
+++ b/help/html/io/exportseqreport.html
@@ -28,16 +28,16 @@
     Much of the information retrieved by Jalview about a sequence is
     visualized on the alignment. Often, however, there are a huge number
     of ontology terms, cross-references, links to publications and other
-    kinds of data shown in the sequence ID tooltip that cannot be
-    examined. In this case, you can view and export the information
-    shown in a sequence's ID tooltip by right-clicking and selecting the
+    kinds of data associated with a sequence, and only some of these are shown in 
+    sequence ID tooltip. To show the full set of annotation and database links for
+    a sequence, right-click and select the
     <strong>&quot;<em>(sequence's name)</em></em>&rarr;Sequence
       Details ...&quot;
     </strong> entry from the <a href="../menus/popupMenu.html">pop-up menu</a>.
   </p>
   <p>
     <strong>Annotation Reports for a range of sequences</strong><br />
-    If you would like to view the tooltips for a number of sequences,
+    If you would like to view database and metadata for a number of sequences,
     simply select them all and then use the <strong>Selection&rarr;Sequence
       Details ...</strong> entry in the <a href="../menus/popupMenu.html">pop-up
       menu</a>.
diff --git a/help/html/releases.html b/help/html/releases.html
index 0c6a131..140466b 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -59,6 +59,7 @@
           </ul>
           <em>Application</em>
           <ul>
+        <li><!-- JAL-1723 -->Sequence ID tool tips have been tamed (databases sorted alphabetically, abridged ID sets) </li>
    	    <li><!-- JAL-2282-->New replacement token for creating URLs <em>just</em> from database cross references. Users with custom links will receive a warning dialog asking them to update their preferences.</li>
 	    <li><!-- JAL-2287-->Cancel button and escape listener on dialog warning user about disconnecting Jalview from a Chimera session</li>
 	    <li><!-- JAL-2281-->Custom URL links for database cross-references are matched to database name regardless of case</li>
diff --git a/help/html/webServices/dbreffetcher.html b/help/html/webServices/dbreffetcher.html
index 52220d2..83c80ba 100644
--- a/help/html/webServices/dbreffetcher.html
+++ b/help/html/webServices/dbreffetcher.html
@@ -25,10 +25,12 @@
 <p>
 <p>
   <strong>Discovering Database References for Sequences</strong><br>
-  Database references are associated with a sequence are displayed as a
-  list in the tooltip shown when mousing over its sequence ID. Jalview
-  uses references for the retrieval of <a
-    href="../features/viewingpdbs.html">PDB structures</a> and <a
+  Database references associated with a sequence are displayed as an
+  abbreviated list in the tooltip shown when mousing over its sequence
+  ID, and can be viewed in full via the
+  <a href="../io/exportseqreport.html">Sequence Details</a> window. .
+  Jalview also uses references for the retrieval of
+  <a href="../features/viewingpdbs.html">PDB structures</a> and <a
     href="../features/dasfeatures.html">DAS features</a>, and for
   retrieving sequence cross-references such as the protein products of a
   DNA sequence.