From: Jim Procter <jprocter@issues.jalview.org>
Date: Tue, 18 Feb 2020 18:37:39 +0000 (+0000)
Subject: JAL-3529 test for AC <Uniprot/EMBL> rather than DR in Stockholm file
X-Git-Tag: Develop-2_11_2_0-d20201215~35^2~3
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=beaa6e0c46460e1ddcea461ffee16f5c4fccca08;p=jalview.git

JAL-3529 test for AC <Uniprot/EMBL> rather than DR in Stockholm file
---

diff --git a/test/jalview/io/StockholmFileTest.java b/test/jalview/io/StockholmFileTest.java
index a16aa07..85ccdcb 100644
--- a/test/jalview/io/StockholmFileTest.java
+++ b/test/jalview/io/StockholmFileTest.java
@@ -114,7 +114,12 @@ public class StockholmFileTest
     String toStockholm = af.formatSequences(FileFormat.Stockholm,
             new Alignment(new SequenceI[]
             { sq }), false);
-    assertTrue(toStockholm.matches("AC\\s+P00224"),
+    System.out.println(toStockholm);
+    // bleh - java.util.Regex sucks
+    assertTrue(
+            Pattern.compile(".*\\s+AC\\s+P00224.*",
+                    java.util.regex.Pattern.DOTALL).matcher(toStockholm)
+                    .matches(),
             "Couldn't locate UNIPROT Accession in generated Stockholm file.");
     AlignmentI fromStockholm = af.readFile(toStockholm,
             DataSourceType.PASTE, FileFormat.Stockholm);