From: Jim Procter <jprocter@compbio.dundee.ac.uk>
Date: Fri, 14 Jun 2013 15:18:23 +0000 (+0100)
Subject: JAL-1316 compact '' to '
X-Git-Tag: Jalview_2_9~241^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=c04483d84d3316dfeb9066d03e0eccf95a71b02b;p=jalview.git

JAL-1316 compact '' to '
---

diff --git a/src/jalview/io/NewickFile.java b/src/jalview/io/NewickFile.java
index d653811..9ed1491 100755
--- a/src/jalview/io/NewickFile.java
+++ b/src/jalview/io/NewickFile.java
@@ -357,6 +357,10 @@ public class NewickFile extends FileParse
           int nl = qnodename.stringMatched().length();
           nodename = new String(qnodename.stringMatched().substring(1,
                   nl - 1));
+          // unpack any escaped colons
+          com.stevesoft.pat.Regex xpandquotes = com.stevesoft.pat.Regex.perlCode("s/''/'/");
+          String widernodename = xpandquotes.replaceAll(nodename);
+          nodename=widernodename;
           // jump to after end of quoted nodename
           nextcp = fcp + nl + 1;
           parsednodename=true;