From: amwaterhouse <Andrew Waterhouse>
Date: Mon, 30 Jan 2006 14:56:51 +0000 (+0000)
Subject: Null sequence check
X-Git-Tag: Root_VamJalview_2_07b+~200
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=c24071f7b9e6b70c94743214677871ae2dc88499;p=jalview.git

Null sequence check
---

diff --git a/src/jalview/gui/OverviewPanel.java b/src/jalview/gui/OverviewPanel.java
index 3662ec2..a35966d 100755
--- a/src/jalview/gui/OverviewPanel.java
+++ b/src/jalview/gui/OverviewPanel.java
@@ -281,13 +281,13 @@ public class OverviewPanel extends JPanel implements Runnable
             lastrow = (int)(row*sampleRow);
             lastcol = (int)(col*sampleCol);
 
-            color = sr.getResidueBoxColour(
+            if(av.alignment.getSequenceAt(lastrow).getLength()>lastcol)
+            {
+             color = sr.getResidueBoxColour(
                 av.alignment.getSequenceAt(lastrow), lastcol);
 
-            if(av.showSequenceFeatures)
-            {
-              color = fr.findFeatureColour(color,
-                                                       av.alignment.getSequenceAt(lastrow),
+             if(av.showSequenceFeatures)
+                  color = fr.findFeatureColour(color,  av.alignment.getSequenceAt(lastrow),
                                                        lastcol);
             }