From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 8 Sep 2005 15:45:21 +0000 (+0000)
Subject: Add lowercase nucleotides to nucleotideHash
X-Git-Tag: Release_2_05b~64
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=c3a5f5735df3a8e85818a6dd1e3f1d614060b721;p=jalview.git

Add lowercase nucleotides to nucleotideHash
---

diff --git a/src/jalview/schemes/ResidueProperties.java b/src/jalview/schemes/ResidueProperties.java
index 8b1d92b..f92bfd1 100755
--- a/src/jalview/schemes/ResidueProperties.java
+++ b/src/jalview/schemes/ResidueProperties.java
@@ -91,6 +91,11 @@ public class ResidueProperties
     nucleotideHash.put("G", new Integer(2));
     nucleotideHash.put("T", new Integer(3));
     nucleotideHash.put("U", new Integer(4));
+    nucleotideHash.put("a", new Integer(0));
+    nucleotideHash.put("c", new Integer(1));
+    nucleotideHash.put("g", new Integer(2));
+    nucleotideHash.put("t", new Integer(3));
+    nucleotideHash.put("u", new Integer(4));
   }
 
   // These numbers should correspond to the indices in the Color hashes