From: Jim Procter <jprocter@issues.jalview.org>
Date: Mon, 22 May 2017 10:34:46 +0000 (+0100)
Subject: JAL-2418 patch build - broken htsjdk import
X-Git-Tag: Release_2_10_2~3^2~75
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=c3b3dc0d34e9da7507211ba332c35d3791a481c5;hp=f49beadc8208986d730f7ed5f4c5cb99329ed92f;p=jalview.git

JAL-2418 patch build - broken htsjdk import
---

diff --git a/src/jalview/datamodel/CigarArray.java b/src/jalview/datamodel/CigarArray.java
index aab82a1..837a10b 100644
--- a/src/jalview/datamodel/CigarArray.java
+++ b/src/jalview/datamodel/CigarArray.java
@@ -20,8 +20,6 @@
  */
 package jalview.datamodel;
 
-import htsjdk.samtools.Cigar;
-
 import java.util.List;
 
 public class CigarArray extends CigarBase
@@ -220,7 +218,7 @@ public class CigarArray extends CigarBase
   }
 
   /**
-   * @see Cigar.getSequenceAndDeletions
+   * @see CigarBase.getSequenceAndDeletions
    * @param GapChar
    *          char
    * @return Object[][]