From: Jim Procter <jprocter@compbio.dundee.ac.uk>
Date: Mon, 17 Jun 2013 16:45:23 +0000 (+0100)
Subject: JAL-1027 fix errors in alternative codon table
X-Git-Tag: Jalview_2_9~240^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=c4b3f11eeec8b3d01027d251054b8390ed4deae2;p=jalview.git

JAL-1027 fix errors in alternative codon table
---

diff --git a/src/jalview/schemes/ResidueProperties.java b/src/jalview/schemes/ResidueProperties.java
index 62e46be..bfff972 100755
--- a/src/jalview/schemes/ResidueProperties.java
+++ b/src/jalview/schemes/ResidueProperties.java
@@ -813,13 +813,13 @@ public class ResidueProperties
     codonHash2.put("AAC", "N");
     codonHash2.put("AAT", "N");
 
-    codonHash2.put("CAA", "E");
-    codonHash2.put("CAG", "E");
+    codonHash2.put("CAA", "Q");
+    codonHash2.put("CAG", "Q");
     codonHash2.put("CAC", "H");
     codonHash2.put("CAT", "H");
 
-    codonHash2.put("GAA", "Q");
-    codonHash2.put("GAG", "Q");
+    codonHash2.put("GAA", "E");
+    codonHash2.put("GAG", "E");
     codonHash2.put("GAC", "D");
     codonHash2.put("GAT", "D");
 
@@ -827,9 +827,9 @@ public class ResidueProperties
     codonHash2.put("TAT", "Y");
 
     codonHash2.put("ACA", "T");
-    codonHash2.put("AAG", "T");
     codonHash2.put("ACC", "T");
     codonHash2.put("ACT", "T");
+    codonHash2.put("ACG", "T");
 
     codonHash2.put("CCA", "P");
     codonHash2.put("CCG", "P");