From: Jim Procter <jprocter@issues.jalview.org>
Date: Wed, 24 Aug 2016 16:29:27 +0000 (+0100)
Subject: JAL-2106 javadoc for sifts mapping method
X-Git-Tag: Release_2_10_0~47^2~4^2~43^2~15^2^2~4
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=c5615cdc7fff013651b1fae48f7daae97f2b2c25;p=jalview.git

JAL-2106 javadoc for sifts mapping method
---

diff --git a/src/jalview/structure/StructureSelectionManager.java b/src/jalview/structure/StructureSelectionManager.java
index 04afab6..182a48f 100644
--- a/src/jalview/structure/StructureSelectionManager.java
+++ b/src/jalview/structure/StructureSelectionManager.java
@@ -585,6 +585,20 @@ public class StructureSelectionManager
     return "cif".equalsIgnoreCase(fileExt);
   }
 
+  /**
+   * retrieve a mapping for seq from SIFTs using associated DBRefEntry for
+   * uniprot or PDB
+   * 
+   * @param seq
+   * @param pdbFile
+   * @param targetChainId
+   * @param pdb
+   * @param maxChain
+   * @param sqmpping
+   * @param maxAlignseq
+   * @return
+   * @throws SiftsException
+   */
   private StructureMapping getStructureMapping(SequenceI seq,
           String pdbFile, String targetChainId, StructureFile pdb,
           PDBChain maxChain, jalview.datamodel.Mapping sqmpping,