From: jprocter Date: Fri, 30 Apr 2010 07:02:49 +0000 (+0000) Subject: 2.5 hidden capabilities X-Git-Tag: Release_2_5~12 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=c59e3c344202e84e4547c1e54abc8d50bb680c1f;p=jalview.git 2.5 hidden capabilities --- diff --git a/help/html/features/hiddenRegions.html b/help/html/features/hiddenRegions.html index bde6a8d..aae73e8 100644 --- a/help/html/features/hiddenRegions.html +++ b/help/html/features/hiddenRegions.html @@ -7,7 +7,9 @@

Use the keyboard key "H" to hide / reveal selected columns and sequences. To hide / reveal only selected sequences, use "Shift H", to hide / reveal only selected columns, use -"Control H".

+"Control H". You can also use "Shift" and +"Control" together to hide everything but the currently +selected region.

Hiding Sequences
To hide selected sequences in an alignment, use the "View -> Hide -> Selected Sequences" menu item or simply select "Hide @@ -26,8 +28,8 @@ or web service alignments (nb. this may change in the future).

Hidden Sequence Representatives and Multiple Views
A word of warning: hidden representative sequence groups are -only partly implemented in the jalview 2.2 release, and the following -issues will be resolved in the future.
+(still) only partly implemented in the jalview 2.5 release, and we hope +to deal with the following issues in the future.
Currently, represented hidden groups are only made correctly if there is just one alignment view. When multiple views on an alignment exist, then the represented group will be displayed correctly in the view in which @@ -59,8 +61,8 @@ constraints apply:

  • Multiple Sequence Alignments are performed locally on on each visible chunk of the input, and concatenated with the hidden regions to form the final result. -

    -
    • +

    +

    Column Separability
    Calculations where hidden columns are excluded, and a single analysis