From: amwaterhouse Date: Fri, 27 May 2005 14:30:33 +0000 (+0000) Subject: pref X-Git-Tag: Release_2_0~149 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=c7c9ce5fb38118f2509c10c81661614d7edeb57b;hp=c973cc268cbba93fa4ca9620c3910d30891a5abc;p=jalview.git pref --- diff --git a/help/html/features/overview.gif b/help/html/features/overview.gif new file mode 100755 index 0000000..b5b1bc5 Binary files /dev/null and b/help/html/features/overview.gif differ diff --git a/help/html/features/preferences.html b/help/html/features/preferences.html new file mode 100755 index 0000000..943728f --- /dev/null +++ b/help/html/features/preferences.html @@ -0,0 +1,29 @@ + + +Preferences + + +

Preferences

+

The "Visual" tab on the preferences window allows you to configure + the default display for a new alignment window.

+

Maximise Window - If this is selected, a new alignment window will stretch + to fit the available space.

+

Show Annotations - If this is selected the new window will display an annotation + panel below the sequences. This annotation panel may have several rows describing + the whole alignment. The 3 standard annotations Conservation, Quality and Consensus + may be shown or hidden by default.

+

Full Sequence ID - If selected the ID panel will display the name of a sequence + plus the start and end residues in the format name/start-end. If not selected, + the displayed ID will be the name of the sequence.

+

Font - The default font name, size and style can be set for a new alignment + window.

+

Gap Symbol - The default gap symbol may be set to either "-" or "."

+

Colour - The default colour scheme for a new alignment window. If the chosen + option is "User Defined" then the last User Defined Colour loaded + or saved via the User Defined Colours panel will be loaded.

+

Open file - If this is selected then the default alignment file will be opened + when Jalview is started. You can change the default file by clicking on file + name and either typing in the file path or selecting it from the file chooser + window.

+ +