From: Jim Procter <jprocter@issues.jalview.org>
Date: Tue, 19 Dec 2017 22:39:22 +0000 (+1300)
Subject: JAL-2880 disabled non-functional test - Jmol parser does not have proper association... 
X-Git-Tag: Release_2_10_4~68^2~43
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=c8b3c0f55aae92e1491a2476c967f9e80895bf99;hp=cd849ecec6e8b80b7f5c229c7a1affc11506133d;p=jalview.git

JAL-2880 disabled non-functional test - Jmol parser does not have proper association mechanism to bind PDB data to derived annotation.
---

diff --git a/test/jalview/io/AnnotatedPDBFileInputTest.java b/test/jalview/io/AnnotatedPDBFileInputTest.java
index e14a478..c0038a1 100644
--- a/test/jalview/io/AnnotatedPDBFileInputTest.java
+++ b/test/jalview/io/AnnotatedPDBFileInputTest.java
@@ -39,6 +39,7 @@ import jalview.structure.StructureImportSettings.StructureParser;
 import java.io.File;
 import java.util.List;
 
+import org.junit.Assert;
 import org.testng.annotations.AfterClass;
 import org.testng.annotations.BeforeClass;
 import org.testng.annotations.BeforeMethod;
@@ -101,18 +102,19 @@ public class AnnotatedPDBFileInputTest
     }
   }
 
-  @Test(groups = { "Functional" })
+  @Test(groups = { "Functional" }, enabled = false)
   public void checkPDBannotationSource()
   {
-
+    Assert.fail(
+            "This test is incorrect - does not verify that JmolParser's annotation rows can be recognised as generated by the Jmol parser.");
     for (SequenceI asq : al.getSequences())
     {
       for (AlignmentAnnotation aa : asq.getAnnotation())
       {
 
         System.out.println("CalcId: " + aa.getCalcId());
-        if (StructureImportSettings.getDefaultPDBFileParser().equals(
-                StructureParser.JALVIEW_PARSER))
+        if (StructureImportSettings.getDefaultPDBFileParser()
+                .equals(StructureParser.JALVIEW_PARSER))
         {
           assertTrue(MCview.PDBfile.isCalcIdForFile(aa, pdbId));
         }