From: tcofoegbu <tcnofoegbu@dundee.ac.uk>
Date: Wed, 27 May 2015 17:01:16 +0000 (+0100)
Subject: Removed redundant classes and dependencies pulled in from last merge of features... 
X-Git-Tag: Release_2_10_0~656
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=ca4e251a5e7dfb71109a8328d60bb237a6ce9944;p=jalview.git

Removed redundant classes and dependencies pulled in from last merge of features/JAL-1740_Decoup-BioJS branch
---

diff --git a/.classpath b/.classpath
index 442795d..b7c26a4 100644
--- a/.classpath
+++ b/.classpath
@@ -66,6 +66,5 @@
 	<classpathentry kind="lib" path="lib/jetty-util-9.2.10.v20150310.jar"/>
 	<classpathentry kind="lib" path="lib/jetty-http-9.2.10.v20150310.jar"/>
 	<classpathentry kind="lib" path="lib/jetty-io-9.2.10.v20150310.jar"/>
-	<classpathentry kind="lib" path="lib/commons-net-3.3.jar" sourcepath="/Users/tcnofoegbu/.m2/repository/commons-net/commons-net/3.3/commons-net-3.3-sources.jar"/>
 	<classpathentry kind="output" path="classes"/>
 </classpath>
diff --git a/lib/commons-net-3.3.jar b/lib/commons-net-3.3.jar
deleted file mode 100644
index f4f19a9..0000000
Binary files a/lib/commons-net-3.3.jar and /dev/null differ
diff --git a/src/jalview/ftp/FtpClient.java b/src/jalview/ftp/FtpClient.java
deleted file mode 100644
index 8c9b3e1..0000000
--- a/src/jalview/ftp/FtpClient.java
+++ /dev/null
@@ -1,134 +0,0 @@
-package jalview.ftp;
-
-import java.io.BufferedOutputStream;
-import java.io.File;
-import java.io.FileOutputStream;
-import java.io.IOException;
-import java.io.OutputStream;
-import java.net.SocketException;
-
-import org.apache.commons.net.ftp.FTPClient;
-import org.apache.commons.net.ftp.FTPFile;
-
-public class FtpClient
-{
-
-  public static boolean authenticateUser(FTPClient ftpClient,
-          String username, String password)
-  {
-    boolean loggedIn = false;
-
-    try
-    {
-      loggedIn = ftpClient.login(username, password);
-    } catch (IOException e)
-    {
-      e.printStackTrace();
-    }
-    disconectFTP(ftpClient);
-
-    return loggedIn;
-  }
-
-  public static FTPClient getFtpClient(String serverHost)
-  {
-    FTPClient ftpClient = new FTPClient();
-    try
-    {
-      ftpClient.connect(serverHost);
-    } catch (SocketException e)
-    {
-      e.printStackTrace();
-    } catch (IOException e)
-    {
-      e.printStackTrace();
-    }
-    return ftpClient;
-  }
-
-  public static void disconectFTP(FTPClient ftpClient)
-  {
-    try
-    {
-      if (ftpClient.isConnected())
-      {
-        ftpClient.logout();
-        ftpClient.disconnect();
-      }
-    } catch (IOException e)
-    {
-      e.printStackTrace();
-    }
-  }
-
-  public static void listDirectory(FTPClient ftpClient, String parentDir,
-          String currentDir, int level) throws IOException
-  {
-    String dirToList = parentDir;
-    if (!currentDir.equals(""))
-    {
-      dirToList += "/" + currentDir;
-    }
-    FTPFile[] subFiles = ftpClient.listFiles(dirToList);
-    if (subFiles != null && subFiles.length > 0)
-    {
-      for (FTPFile aFile : subFiles)
-      {
-        String currentFileName = aFile.getName();
-        if (currentFileName.equals(".") || currentFileName.equals(".."))
-        {
-          // skip parent directory and directory itself
-          continue;
-        }
-        for (int i = 0; i < level; i++)
-        {
-          System.out.print("\t");
-        }
-        if (aFile.isDirectory())
-        {
-          System.out.println("[" + currentFileName + "]");
-          listDirectory(ftpClient, dirToList, currentFileName, level + 1);
-        }
-        else
-        {
-          System.out.println(currentFileName);
-        }
-      }
-    }
-  }
-
-  public static boolean downloadFile(FTPClient client, String remoteFile,
-          String local)
-  {
-    boolean success = false;
-    File downloadFile = new File(local);
-    OutputStream outputStream = null;
-    try
-    {
-      outputStream = new BufferedOutputStream(new FileOutputStream(
-              downloadFile));
-
-      success = client.retrieveFile(remoteFile, outputStream);
-    } catch (IOException e)
-    {
-      e.printStackTrace();
-    } finally
-    {
-      try
-      {
-        if (outputStream != null)
-        {
-          outputStream.close();
-        }
-      } catch (IOException e)
-      {
-        e.printStackTrace();
-      }
-    }
-    if (success)
-    {
-      System.out.println(remoteFile + " has been downloaded successfully.");
-    }
-    return success;
-  }
-}