From: TZVanaalten <TZVanaalten@LS30916.ad.lifesci.dundee.ac.uk>
Date: Mon, 28 Aug 2017 10:26:23 +0000 (+0100)
Subject: JAL-2629 fix issue where HMM would not be added to alignment
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=cc04412e8052d7c2546e8e7ffdcdcf8dc579f10a;p=jalview.git

JAL-2629 fix issue where HMM would not be added to alignment
---

diff --git a/src/jalview/io/FileLoader.java b/src/jalview/io/FileLoader.java
index fd8429b..73fbc88 100755
--- a/src/jalview/io/FileLoader.java
+++ b/src/jalview/io/FileLoader.java
@@ -427,6 +427,7 @@ public class FileLoader implements Runnable
                       .getSequenceAt(alignment.getAbsoluteHeight() - 1);
               seq.setIsHMMConsensusSequence(true);
               alignment.deleteSequence(alignment.getAbsoluteHeight() - 1);
+              alignment.insertSequenceAt(0, seq);
               viewport.getAlignPanel().adjustAnnotationHeight();
               viewport.updateSequenceIdColours();