From: jprocter <Jim Procter>
Date: Thu, 18 May 2006 09:22:26 +0000 (+0000)
Subject: added future method comment
X-Git-Tag: Release_2_1~397
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=cc0bde4edc7375f46e29c1814238bb765a6882de;p=jalview.git

added future method comment
---

diff --git a/src/jalview/io/JnetAnnotationMaker.java b/src/jalview/io/JnetAnnotationMaker.java
index 9a397d7..17b4d68 100755
--- a/src/jalview/io/JnetAnnotationMaker.java
+++ b/src/jalview/io/JnetAnnotationMaker.java
@@ -22,6 +22,8 @@ public class JnetAnnotationMaker
   {
     int i = 0;
     SequenceI[] preds = prediction.getSeqsAsArray();
+    // in the future we could search for the query
+    // sequence in the alignment before calling this function.
     SequenceI seqRef = al.getSequenceAt(FirstSeq);
     int width = preds[0].getSequence().length();
     int[] gapmap = al.getSequenceAt(FirstSeq).gapMap();