From: cmzmasek@gmail.com Date: Thu, 20 Dec 2012 18:21:29 +0000 (+0000) Subject: Edited wiki page RIO through web user interface. X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=cc50f854f77ec74badc0ce0cbafc551f973d922f;p=jalview.git Edited wiki page RIO through web user interface. --- diff --git a/wiki/RIO.wiki b/wiki/RIO.wiki index 04186a7..c1f05a2 100644 --- a/wiki/RIO.wiki +++ b/wiki/RIO.wiki @@ -30,6 +30,10 @@ The species tree ideally is in [http://www.biomedcentral.com/1471-2105/10/356/ p The species tree is allowed to have nodes with more than two descendants (polytomies), as long as the (slower) GSDIR ([GSDI GSDI] re-rooting) algorithm is used. +==== Note ==== +Since the Java memory default allocation too small for even moderately large data-sets, it is necessary to increase it with the `-Xmx2048m` command line option. + + === Examples === `rio gene_trees.nh species.xml outtable.tsv log.txt`