From: kiramt <k.mourao@dundee.ac.uk>
Date: Wed, 2 Nov 2016 15:22:45 +0000 (+0000)
Subject: JAL-2281 Use DBRefs.selectRefs to uppercase URL link target
X-Git-Tag: Release_2_10_1^2~18^2~2^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=cd06f45d5fedf6fcc87c0d77aa6c2b1fb6ea7a46;hp=9757315e2f66b72e669b6e7408ae8faedd1ae9b3;p=jalview.git

JAL-2281 Use DBRefs.selectRefs to uppercase URL link target
---

diff --git a/src/jalview/util/DBRefUtils.java b/src/jalview/util/DBRefUtils.java
index e6aa472..04cb75e 100755
--- a/src/jalview/util/DBRefUtils.java
+++ b/src/jalview/util/DBRefUtils.java
@@ -100,14 +100,14 @@ public class DBRefUtils
     HashSet<String> srcs = new HashSet<String>();
     for (String src : sources)
     {
-      srcs.add(src);
+      srcs.add(src.toUpperCase());
     }
 
     List<DBRefEntry> res = new ArrayList<DBRefEntry>();
     for (DBRefEntry dbr : dbrefs)
     {
       String source = getCanonicalName(dbr.getSource());
-      if (srcs.contains(source))
+      if (srcs.contains(source.toUpperCase()))
       {
         res.add(dbr);
       }
diff --git a/src/jalview/util/UrlLink.java b/src/jalview/util/UrlLink.java
index b8e3eeb..3ee6432 100644
--- a/src/jalview/util/UrlLink.java
+++ b/src/jalview/util/UrlLink.java
@@ -104,8 +104,6 @@ public class UrlLink
 
     label = label.trim();
     target = target.trim();
-    target = target.toUpperCase(); // DBRefEntry uppercases DB names
-    // NB getCanonicalName might be better but does not currently change case
   }
 
   /**