From: Jim Procter <j.procter@dundee.ac.uk>
Date: Mon, 20 Oct 2014 12:46:36 +0000 (+0100)
Subject: JAL-674 test for the test for presence of annotation derived from particular PDB... 
X-Git-Tag: Jalview_2_9~169^2~9
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=cd47f700cdf7aef86873db26ce3dc97a20c672c7;p=jalview.git

JAL-674 test for the test for presence of annotation derived from particular PDB file
---

diff --git a/test/jalview/io/AnnotatedPDBFileInputTest.java b/test/jalview/io/AnnotatedPDBFileInputTest.java
index 451f4fd..acc2cb8 100644
--- a/test/jalview/io/AnnotatedPDBFileInputTest.java
+++ b/test/jalview/io/AnnotatedPDBFileInputTest.java
@@ -5,6 +5,7 @@ import static org.junit.Assert.assertNotNull;
 import static org.junit.Assert.assertTrue;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
+import jalview.datamodel.SequenceI;
 import jalview.gui.AlignFrame;
 
 import org.junit.Before;
@@ -15,11 +16,12 @@ public class AnnotatedPDBFileInputTest
 
   AlignmentI al;
 
+  String pdbStr = "examples/2GIS.pdb";
   @Before
   public void setup() throws Exception
   {
     FileLoader loader = new FileLoader(false);
-    AlignFrame af = loader.LoadFileWaitTillLoaded("examples/1gaq.txt",
+    AlignFrame af = loader.LoadFileWaitTillLoaded(pdbStr,
             FormatAdapter.FILE);
     al = af.getViewport().getAlignment();
   }
@@ -45,6 +47,21 @@ public class AnnotatedPDBFileInputTest
   }
 
   @Test
+  public void checkPDBannotationSource()
+  {
+
+    for (SequenceI asq : al.getSequences())
+    {
+      for (AlignmentAnnotation aa : asq.getAnnotation())
+      {
+
+        System.out.println("CalcId: " + aa.getCalcId());
+        assertTrue(MCview.PDBfile.isCalcIdForFile(aa.getCalcId(), pdbStr));
+      }
+    }
+  }
+
+  @Test
   public void checkAnnotationWiring()
   {
     assertTrue(al.getAlignmentAnnotation() != null);