From: cmzmasek@gmail.com Date: Fri, 29 Jun 2012 19:44:58 +0000 (+0000) Subject: Edited wiki page GSDI through web user interface. X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=d08c3ec6cb69dd9cf44d9dfcb45b3530ba608d92;p=jalview.git Edited wiki page GSDI through web user interface. --- diff --git a/wiki/GSDI.wiki b/wiki/GSDI.wiki index aeadf5d..928dbce 100644 --- a/wiki/GSDI.wiki +++ b/wiki/GSDI.wiki @@ -27,6 +27,13 @@ Must be in phyloXM format, with taxonomy and sequence data in appropriate fields ==== Species tree ==== Must be in phyloXML format unless option -q is used. +=== Taxonomic mapping between gene and species tree === + +GSDI can establish a taxonomic mapping between gene and species tree on the following three data fields: + * scientific names (e.g. "Pyrococcus horikoshii") + * taxonomic identifiers (e.g. "35932" from uniprot or ncbi) + * taxonomy codes (e.g. "PYRHO") + === Output === Besides the main output of a gene tree with duplications and speciations assigned to all of its internal nodes, this program also produces the following: