From: Jim Procter <jprocter@issues.jalview.org>
Date: Wed, 19 Jun 2019 10:01:43 +0000 (+0100)
Subject: JAL-3111 release notes for JAL-27830 JAL-2876 JAL-2567 and JAL-2256
X-Git-Tag: Release_2_11_0~7^2^2~3
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=d0a07b2a354aaae5b1ce8f8bc228681d46b11b7b;p=jalview.git

JAL-3111 release notes for JAL-27830 JAL-2876 JAL-2567 and JAL-2256
---

diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index f70d2bb..7b33149 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -357,7 +357,11 @@ li:before {
             <!-- JAL-2541,JAL-2684 (tests) -->Delete/Cut selection doesn't relocate
             sequence features correctly when start of sequence is
             removed (Known defect since 2.10)</li>
-        </ul><em>New Known Defects</em>
+					<li>
+						<!-- JAL-2830 -->Inserting gap sequence via the Edit Sequence
+						dialog corrupts dataset sequence
+					</li>
+				</ul><em>New Known Defects</em>
         <ul>
           <li>
             <!-- JAL-2647 -->Input Data menu entry is greyed out when PCA View is restored from a Jalview 2.11 project</li> 
@@ -372,6 +376,12 @@ li:before {
 						window after dragging left to select columns to left of visible
 						region
 					</li>
+					<li>
+						<!-- JAL-2876 -->Features coloured according to their description
+						string and thresholded by score in earlier versions of Jalview are
+						not shown as thresholded features in 2.11. To workaround please
+						create a Score filter instead.
+					</li>
 				</ul>
       </td>
     </tr>
@@ -1458,7 +1468,16 @@ li:before {
               <!-- JAL-2589 -->User defined gap colour not shown in
               overview when features overlaid on alignment
             </li>
-          </ul>
+						<li>
+							<!-- JAL-2567 -->Feature settings for different views not
+							recovered correctly from Jalview project file
+						</li>
+						<li>
+							<!-- JAL-2256 -->Feature colours in overview when first opened
+							(automatically via preferences) are different to the main
+							alignment panel
+						</li>
+					</ul>
           <em>Data import/export</em>
           <ul>
             <li>