From: Jim Procter Date: Mon, 8 Jul 2013 12:48:09 +0000 (+0100) Subject: make sure 'example alignment' can be found in documentation X-Git-Tag: Jalview_2_9~228^2 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=d0f16982ba72b3555e8982872ad58acb33dbbcbd;p=jalview.git make sure 'example alignment' can be found in documentation --- diff --git a/help/html/features/preferences.html b/help/html/features/preferences.html index ca3b32e..9651f78 100755 --- a/help/html/features/preferences.html +++ b/help/html/features/preferences.html @@ -22,6 +22,7 @@

Preferences

The preferences panel is opened from the Jalview Desktop’s Tools menu.

There are six tabs in the Preferences dialog box:

The "Visual" @@ -87,7 +88,7 @@ be sorted by Id or pairwise identity.

Open file - If this is selected then the default alignment file will be opened when Jalview is started. You can change the default file by clicking on file name and either typing in the file -path or selecting it from the file chooser window.
+path or selecting it from the file chooser window.
Note: The default example alignment is updated periodically to demonstrate new features in Jalview.

"Colours" Preferences tab

Alignment Colour - The default colour scheme for a new alignment window. If the chosen option is "User Defined" then the last