From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 6 Apr 2005 17:14:39 +0000 (+0000)
Subject: dont draw first block if colour is null
X-Git-Tag: Release_2_0~481
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=d1055a6dd6cc9d065e9e589eae260c16cb941265;p=jalview.git

dont draw first block if colour is null
---

diff --git a/src/jalview/gui/SequenceRenderer.java b/src/jalview/gui/SequenceRenderer.java
index 442239d..cf7db6c 100755
--- a/src/jalview/gui/SequenceRenderer.java
+++ b/src/jalview/gui/SequenceRenderer.java
@@ -46,18 +46,18 @@ public class SequenceRenderer implements RendererI
 
     graphics = g;
 
-    drawBoxes(seq, start, end, x1, y1, (int) width, height, pid);
+    drawBoxes(seq, start, end, x1, y1, (int) width, height);
 
     fm = g.getFontMetrics();
     drawText(seq,start,end,x1,y1,(int)width,height);
 
   }
 
-  public void drawBoxes(SequenceI seq,int start, int end, int x1, int y1, int width, int height,Vector freq) {
+  public void drawBoxes(SequenceI seq,int start, int end, int x1, int y1, int width, int height) {
     int i      = start;
     int length = seq.getLength();
 
-    int curStart = x1;
+    int curStart = -1;
     int curWidth = width;
 
     Color tempColour = null;
@@ -76,7 +76,8 @@ public class SequenceRenderer implements RendererI
 
       if (resBoxColour != tempColour)
       {
-        graphics.fillRect(x1+width*(curStart-start),y1,curWidth,height);
+        if(tempColour!=null)
+          graphics.fillRect(x1+width*(curStart-start),y1,curWidth,height);
         graphics.setColor(resBoxColour);
 
         curStart = i;
@@ -89,7 +90,9 @@ public class SequenceRenderer implements RendererI
 
       i++;
     }
-    graphics.fillRect(x1+width*(curStart-start),y1,curWidth,height);
+
+
+     graphics.fillRect(x1+width*(curStart-start),y1,curWidth,height);
   }
 
   public void drawText(SequenceI seq,int start, int end, int x1, int y1, int width, int height)