From: Jim Procter <jprocter@issues.jalview.org>
Date: Fri, 16 Dec 2016 15:14:55 +0000 (+0000)
Subject: JAL-2360 report line number when threshold cannot be parsed as a value
X-Git-Tag: Release_2_10_3b1~357^2~48
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=d15f5de72b92c8ac1b217362dc565c496e8f9370;p=jalview.git

JAL-2360 report line number when threshold cannot be parsed as a value
---

diff --git a/src/jalview/io/AnnotationFile.java b/src/jalview/io/AnnotationFile.java
index f80adef..2af3fcd 100755
--- a/src/jalview/io/AnnotationFile.java
+++ b/src/jalview/io/AnnotationFile.java
@@ -1430,7 +1430,7 @@ public class AnnotationFile
       value = Float.valueOf(nextToken);
     } catch (NumberFormatException e)
     {
-      System.err.println("Threshold '" + nextToken
+      System.err.println("line " + nlinesread + ": Threshold '" + nextToken
               + "' invalid, setting to zero");
     }
     String label = st.hasMoreTokens() ? st.nextToken() : null;