From: Jim Procter <jprocter@compbio.dundee.ac.uk>
Date: Fri, 12 Jul 2013 15:58:22 +0000 (+0100)
Subject: JAL-1347 RNA Structure consensus follows the alignment viewport consensus rendering... 
X-Git-Tag: Jalview_2_9~225^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=d1d2ea58719115718d0672a9f8fb85c48a908468;p=jalview.git

JAL-1347 RNA Structure consensus follows the alignment viewport consensus rendering settings in version 2.8.x
---

diff --git a/src/jalview/renderer/AnnotationRenderer.java b/src/jalview/renderer/AnnotationRenderer.java
index bafa3e7..09152d6 100644
--- a/src/jalview/renderer/AnnotationRenderer.java
+++ b/src/jalview/renderer/AnnotationRenderer.java
@@ -240,7 +240,7 @@ public class AnnotationRenderer
       }
       // TODO extend annotation row to enable dynamic and static profile data to
       // be stored
-      if (aa.groupRef == null && aa.sequenceRef == null && av_renderProfile)
+      if (aa.groupRef == null && aa.sequenceRef == null)
       {
         return AAFrequency.extractProfile(hconsensus[column],
                 av_ignoreGapsConsensus);
@@ -262,7 +262,7 @@ public class AnnotationRenderer
         // to
         // be stored
         if (aa.groupRef == null && aa.sequenceRef == null
-                && av_renderProfile && hStrucConsensus != null
+                && hStrucConsensus != null
                 && hStrucConsensus.length > column)
         {
           return StructureFrequency.extractProfile(hStrucConsensus[column],